Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIS80_RS18335 Genome accession   NZ_CP085413
Coordinates   3576859..3578097 (-) Length   412 a.a.
NCBI ID   WP_000990720.1    Uniprot ID   -
Organism   Bacillus paranthracis strain KF11     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3571859..3583097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS80_RS18310 (LIS80_18340) spoVS 3571938..3572198 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LIS80_RS18315 (LIS80_18345) - 3572347..3573141 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  LIS80_RS18320 (LIS80_18350) rny 3573306..3574871 (-) 1566 WP_000099355.1 ribonuclease Y -
  LIS80_RS18325 (LIS80_18355) - 3575357..3575779 (-) 423 Protein_3563 recombinase RecA -
  LIS80_RS18330 (LIS80_18360) recA 3576106..3576714 (-) 609 Protein_3564 recombinase RecA -
  LIS80_RS18335 (LIS80_18365) cinA 3576859..3578097 (-) 1239 WP_000990720.1 competence/damage-inducible protein CinA Machinery gene
  LIS80_RS18340 (LIS80_18370) pgsA 3578118..3578696 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS80_RS18345 (LIS80_18375) - 3578760..3579686 (-) 927 WP_000137489.1 helix-turn-helix domain-containing protein -
  LIS80_RS18350 (LIS80_18380) - 3579708..3580493 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LIS80_RS18355 (LIS80_18385) - 3580633..3580881 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  LIS80_RS18360 (LIS80_18390) - 3580957..3581670 (-) 714 WP_000759622.1 SDR family oxidoreductase -
  LIS80_RS18365 (LIS80_18395) - 3581774..3583060 (-) 1287 WP_000411947.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45528.85 Da        Isoelectric Point: 5.4756

>NTDB_id=617922 LIS80_RS18335 WP_000990720.1 3576859..3578097(-) (cinA) [Bacillus paranthracis strain KF11]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLEEKLVYDENALALISNYFKRTGREFTENNKKQALVLNGGTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVHEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVRELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=617922 LIS80_RS18335 WP_000990720.1 3576859..3578097(-) (cinA) [Bacillus paranthracis strain KF11]
ATGAATGCTGAAATTATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGCATTAATGTGTACTACCATACAGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AGGTTGCAGAAGAACGTGCGGACATGCTTATTTTTACAGGTGGATTAGGCCCGACAAAAGATGATTTGACGAAAGAAACA
ATTGCGTCTAGCTTAGAGGAAAAGCTTGTATATGATGAAAATGCATTAGCATTAATAAGTAATTATTTTAAACGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTGAATGGAGGAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATCTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTTGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATCGCCCCGCTTGCCAATG
ATGGAGAAGTAACATTACGTTTAACGGCTAAACATCAAAATGTTCATGAAGCGGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTTGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTACATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTATTTGGTAATCAAGTAACAGAAAACGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTACCATAATGATGTGAAGCAACATGTATTACATGTACCTGAGGAAGTC
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAGAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAGCCGGGAACTGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.495

100

0.585
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381