Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT28_RS19270 Genome accession   NZ_CP085409
Coordinates   3773882..3775120 (-) Length   412 a.a.
NCBI ID   WP_242252003.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain KF1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3768882..3780120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT28_RS19250 (LIT28_19260) spoVS 3769294..3769554 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LIT28_RS19255 (LIT28_19265) - 3769704..3770498 (-) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  LIT28_RS19260 (LIT28_19270) rny 3770663..3772225 (-) 1563 WP_063221052.1 ribonuclease Y -
  LIT28_RS19265 (LIT28_19275) recA 3772708..3773739 (-) 1032 WP_001283854.1 recombinase RecA Machinery gene
  LIT28_RS19270 (LIT28_19280) cinA 3773882..3775120 (-) 1239 WP_242252003.1 competence/damage-inducible protein CinA Machinery gene
  LIT28_RS19275 (LIT28_19285) pgsA 3775141..3775719 (-) 579 WP_060631950.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT28_RS19280 (LIT28_19290) - 3775783..3776694 (-) 912 WP_242252004.1 helix-turn-helix domain-containing protein -
  LIT28_RS19285 (LIT28_19295) - 3776716..3777501 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LIT28_RS19290 (LIT28_19300) - 3777641..3777889 (-) 249 WP_029439572.1 DUF3243 domain-containing protein -
  LIT28_RS19295 (LIT28_19305) - 3777965..3778678 (-) 714 WP_242252005.1 SDR family oxidoreductase -
  LIT28_RS19300 (LIT28_19310) - 3778782..3780068 (-) 1287 WP_098554995.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45180.60 Da        Isoelectric Point: 5.6473

>NTDB_id=617872 LIT28_RS19270 WP_242252003.1 3773882..3775120(-) (cinA) [Bacillus thuringiensis strain KF1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
ISSCLGGELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDRQTNPTIAPLANDGEVTLRLTAKHQNADEAAKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPGGV
LSTDGAVSKECACYLAENVKGILKADIGISFTGVAGPDASEQKEPGTVFIGLAIKDEPTIVFPLHLSGSRQQIRERSAKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=617872 LIT28_RS19270 WP_242252003.1 3773882..3775120(-) (cinA) [Bacillus thuringiensis strain KF1]
ATGAATGCTGAAATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
GAAGTTAGCTTCAATTGGAATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCGGAAGAACGTGCTGACATGCTTATTTTCACAGGTGGATTAGGTCCGACAAAAGATGATCTGACGAAAGAAACG
ATATCTTCTTGTTTGGGTGGAGAGCTTGTGTATGATGAAAAAGCATTAGCCTCAATAAGCGATTACTTTAAGCGTACAGG
CCGCGAATTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAGATGGAGCAACTGTATTTGCGAATGATCACGGTATGG
CACCTGGTATGGGGTTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAGATGAAGCCGATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTTTTCGGAAT
TGGGGAATCTCAATTAGAAGTGAAAGTTCAAGATTTAATTGATAGACAAACGAACCCGACAATCGCCCCCCTTGCGAATG
ATGGAGAAGTGACACTACGTTTAACTGCCAAACATCAAAATGCTGATGAAGCAGCGAAACTCATCCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAGTTTCTGCACTATAAAGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGCAATCAAGTGACAGAAAGTGCTGGTG
TGTCTTCAGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTCTACATGTACCTGGGGGAGTG
TTGTCTACTGATGGTGCAGTTAGTAAAGAATGTGCTTGTTATCTCGCTGAAAATGTTAAAGGTATATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACAGAAAGAGCCGGGAACGGTATTCATTGGATTGGCGA
TTAAGGATGAACCAACTATAGTCTTTCCTCTCCATTTAAGTGGAAGTCGTCAACAAATTAGGGAACGTTCGGCGAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.738

100

0.587
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.209

98.786

0.447
  cinA Streptococcus suis isolate S10

42.063

91.748

0.386