Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIS81_RS18580 Genome accession   NZ_CP085399
Coordinates   3638725..3639963 (-) Length   412 a.a.
NCBI ID   WP_226640245.1    Uniprot ID   -
Organism   Bacillus tropicus strain CK18     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3633725..3644963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS81_RS18555 (LIS81_18570) spoVS 3633812..3634072 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LIS81_RS18560 (LIS81_18575) - 3634221..3635015 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  LIS81_RS18565 (LIS81_18580) rny 3635178..3636740 (-) 1563 WP_000204911.1 ribonuclease Y -
  LIS81_RS18570 (LIS81_18585) - 3637222..3637644 (-) 423 Protein_3611 DNA recombination/repair protein RecA -
  LIS81_RS18575 (LIS81_18590) recA 3637972..3638580 (-) 609 Protein_3612 recombinase RecA -
  LIS81_RS18580 (LIS81_18595) cinA 3638725..3639963 (-) 1239 WP_226640245.1 competence/damage-inducible protein CinA Machinery gene
  LIS81_RS18585 (LIS81_18600) pgsA 3639984..3640562 (-) 579 WP_001052965.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIS81_RS18590 (LIS81_18605) - 3640626..3641552 (-) 927 WP_098880146.1 helix-turn-helix domain-containing protein -
  LIS81_RS18595 (LIS81_18610) - 3641574..3642359 (-) 786 WP_252210714.1 DUF3388 domain-containing protein -
  LIS81_RS18600 (LIS81_18615) - 3642499..3642747 (-) 249 WP_000114448.1 DUF3243 domain-containing protein -
  LIS81_RS18605 (LIS81_18620) - 3642824..3643537 (-) 714 WP_061401462.1 SDR family oxidoreductase -
  LIS81_RS18610 (LIS81_18625) - 3643641..3644927 (-) 1287 WP_000411945.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45454.75 Da        Isoelectric Point: 5.2113

>NTDB_id=617726 LIS81_RS18580 WP_226640245.1 3638725..3639963(-) (cinA) [Bacillus tropicus strain CK18]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDENALALISDYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMRPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTAKHQNAHEAEKLIQHMED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDATEHKEPGTVFVGLAMKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=617726 LIS81_RS18580 WP_226640245.1 3638725..3639963(-) (cinA) [Bacillus tropicus strain CK18]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGCATTAATGTGTACTACCATACTGTAGTTGGAGATAATAACAAACGATTACAGCAGGCGATTG
AAGTTGCAGAAGAACGTGCGGATATGCTTATTTTTACAGGTGGATTAGGTCCGACAAAAGATGATTTGACGAAGGAAACA
ATTGCGTCTAGCTTAGGGGAAGAGCTTGTATATGACGAAAATGCATTAGCATTAATAAGCGATTATTTTAAGCGTACAGG
TCGTGAGTTCACTGAAAATAATAAAAAGCAGGCACTCGTTTTAAATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGTTTAAATAAGAACGGAAAAGTTTATATCTTATTACCAGGACCGCCGAAAGAAATGAGGCCAATGTAT
GTAAGTTATGTAGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTCTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACAATCGCCCCGCTTGCGAGTG
ATGGAGAAGTGACATTACGTTTAACTGCGAAGCATCAAAATGCTCATGAAGCGGAGAAGCTCATTCAGCATATGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCACTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCGGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTACAGAACATAAAGAGCCGGGAACAGTATTTGTTGGATTGGCGA
TGAAAGATGAACCAACTGTAGTCTTTCCTCTAAATTTAAGCGGAAGTCGTCAACAAATTAGGGAACGCTCAGCAAAATAT
GGATTTTATCATTTGTATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.223

100

0.592
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381