Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT29_RS10605 Genome accession   NZ_CP085398
Coordinates   2017619..2018857 (+) Length   412 a.a.
NCBI ID   WP_252266453.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain F17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2012619..2023857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT29_RS10580 (LIT29_10595) - 2013843..2014553 (+) 711 WP_252266452.1 SDR family oxidoreductase -
  LIT29_RS10585 (LIT29_10600) - 2014777..2015034 (+) 258 WP_048003989.1 DUF3243 domain-containing protein -
  LIT29_RS10590 (LIT29_10605) - 2015208..2015999 (+) 792 WP_048003988.1 DUF3388 domain-containing protein -
  LIT29_RS10595 (LIT29_10610) - 2016019..2016927 (+) 909 WP_063191227.1 RodZ family helix-turn-helix domain-containing protein -
  LIT29_RS10600 (LIT29_10615) pgsA 2016977..2017555 (+) 579 WP_048003986.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT29_RS10605 (LIT29_10620) cinA 2017619..2018857 (+) 1239 WP_252266453.1 competence/damage-inducible protein A Machinery gene
  LIT29_RS10610 (LIT29_10625) recA 2019072..2020109 (+) 1038 WP_048003984.1 recombinase RecA Machinery gene
  LIT29_RS10615 (LIT29_10630) rny 2020517..2022076 (+) 1560 WP_048003983.1 ribonuclease Y -
  LIT29_RS10620 (LIT29_10635) - 2022186..2022989 (+) 804 WP_048003982.1 TIGR00282 family metallophosphoesterase -
  LIT29_RS10625 (LIT29_10640) spoVS 2023123..2023383 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 44786.85 Da        Isoelectric Point: 4.6344

>NTDB_id=617670 LIT29_RS10605 WP_252266453.1 2017619..2018857(+) (cinA) [Rossellomorea marisflavi strain F17]
MNAEIIAVGSELLLGQIANTNAQFISERLAEVGVNVFYHTSVGDNPARLEEVIKHAEERADLLIFTGGLGPTKDDLTKET
IARSLGVSLSMDEEAMDSIRAYFEKVGRVMTPNNEKQALILEGSAPLKNDFGMAPGMVFQQAGKAYILLPGPPSEMRPMF
STYGIPAVMNLMKRKEVIHSRVLRFFGIGESQLEADLEELIDRQTNPTIAPLAGDGEVTLRLTAKHESKDVAETLLNELE
SEIRETVGEYLYGYDQDSLERVGFRLLKEKGLTLAAAESLTAGLFQSSLASIAGASSVLEGGVVCYQDSVKRNVLNVREE
TLKNQGAVSRECAIELAANVRSLFKTDIGISFTGVAGPEAQGDLPPGTVWIGIAAGEEEPKAYQLTLAGSRNGNRSRTVK
YGWHYLVKECNE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=617670 LIT29_RS10605 WP_252266453.1 2017619..2018857(+) (cinA) [Rossellomorea marisflavi strain F17]
ATGAATGCAGAAATTATCGCAGTCGGATCGGAATTACTTTTAGGGCAGATCGCTAATACCAATGCCCAGTTCATCTCAGA
AAGGCTTGCCGAAGTAGGGGTGAATGTGTTTTATCATACAAGTGTGGGAGATAACCCGGCAAGACTTGAAGAAGTCATCA
AGCATGCTGAAGAGAGGGCGGATCTGCTCATCTTTACAGGAGGTCTCGGACCGACCAAGGATGATCTCACCAAAGAGACC
ATTGCAAGGAGTCTGGGCGTCAGCCTCTCGATGGATGAAGAAGCCATGGACTCCATCAGGGCTTATTTCGAGAAAGTAGG
CAGGGTGATGACACCCAACAACGAAAAGCAGGCTTTGATACTCGAGGGTTCGGCACCATTGAAAAATGACTTTGGCATGG
CACCCGGGATGGTGTTTCAACAAGCGGGTAAAGCATATATCCTGTTGCCTGGCCCGCCTTCTGAAATGAGGCCGATGTTC
AGTACCTACGGGATTCCTGCCGTCATGAACCTCATGAAACGAAAAGAGGTGATCCACTCCCGTGTTCTCCGTTTCTTCGG
AATCGGCGAGTCGCAGCTAGAAGCCGACCTTGAAGAACTCATCGACCGCCAGACGAATCCGACGATCGCACCTCTTGCAG
GTGACGGTGAAGTGACCTTGCGATTGACGGCCAAGCACGAATCAAAAGATGTCGCGGAGACACTTCTGAATGAGCTGGAA
TCAGAAATCCGTGAAACCGTCGGGGAGTATCTATATGGTTACGATCAAGATTCACTGGAACGGGTGGGCTTCAGACTCCT
GAAAGAAAAAGGCTTGACCCTTGCGGCAGCTGAGAGCCTGACGGCAGGCTTGTTCCAATCCAGCCTCGCCTCGATTGCAG
GAGCTTCTTCCGTCCTTGAGGGCGGAGTGGTGTGCTATCAGGATTCTGTGAAAAGGAATGTGCTGAACGTGCGGGAGGAA
ACATTGAAGAACCAAGGTGCGGTCAGCCGTGAATGTGCCATTGAGCTTGCAGCCAATGTGCGGTCCCTGTTCAAAACCGA
TATCGGCATCAGCTTTACCGGCGTAGCAGGACCTGAAGCGCAGGGGGATCTGCCTCCTGGTACCGTCTGGATCGGCATAG
CCGCTGGTGAGGAAGAGCCGAAGGCATACCAGCTCACTCTGGCCGGAAGCCGGAACGGCAACCGCAGCCGGACGGTGAAG
TATGGGTGGCATTATTTGGTGAAGGAATGCAATGAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.916

98.786

0.612
  cinA Streptococcus mitis SK321

46.651

100

0.473
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.464
  cinA Streptococcus mutans UA159

46.135

100

0.464
  cinA Streptococcus pneumoniae TIGR4

44.976

100

0.456
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.456
  cinA Streptococcus pneumoniae R6

44.976

100

0.456
  cinA Streptococcus pneumoniae D39

44.737

100

0.454
  cinA Streptococcus suis isolate S10

40.732

99.515

0.405