Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LIT26_RS09375 Genome accession   NZ_CP085395
Coordinates   1904415..1905647 (+) Length   410 a.a.
NCBI ID   WP_034315395.1    Uniprot ID   A0AAN2PGV7
Organism   Peribacillus frigoritolerans strain CK6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1899415..1910647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIT26_RS09350 (LIT26_09375) - 1900627..1901352 (+) 726 WP_048684725.1 SDR family oxidoreductase -
  LIT26_RS09355 (LIT26_09380) - 1901434..1901691 (+) 258 WP_034313532.1 DUF3243 domain-containing protein -
  LIT26_RS09360 (LIT26_09385) - 1901934..1902725 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  LIT26_RS09365 (LIT26_09390) - 1902734..1903642 (+) 909 WP_350494610.1 RodZ domain-containing protein -
  LIT26_RS09370 (LIT26_09395) pgsA 1903808..1904392 (+) 585 WP_034313524.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LIT26_RS09375 (LIT26_09400) cinA 1904415..1905647 (+) 1233 WP_034315395.1 competence/damage-inducible protein A Machinery gene
  LIT26_RS09380 (LIT26_09405) recA 1905997..1907043 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  LIT26_RS09385 (LIT26_09410) rny 1907397..1908956 (+) 1560 WP_034313519.1 ribonuclease Y -
  LIT26_RS09390 (LIT26_09415) - 1909107..1909904 (+) 798 WP_063591644.1 TIGR00282 family metallophosphoesterase -
  LIT26_RS09395 (LIT26_09420) spoVS 1910078..1910338 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44983.29 Da        Isoelectric Point: 5.0424

>NTDB_id=617555 LIT26_RS09375 WP_034315395.1 1904415..1905647(+) (cinA) [Peribacillus frigoritolerans strain CK6]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKSNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=617555 LIT26_RS09375 WP_034315395.1 1904415..1905647(+) (cinA) [Peribacillus frigoritolerans strain CK6]
ATGGATGCAGAAATCATTGCAGTGGGTTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGGATCAACGTTTTTTACCATACTGTGGTCGGAGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTGGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCGGGAATGGTTTTGTCCAAATCTGGGATTACATATATGCTCCTGCCTGGTCCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAGATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTTGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCTAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCCGGGTCGGTAAGTTCCATTATGGAAGTGATAATACTTCGCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGTCCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCGGGGCCGGACGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCACTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

45

100

0.461
  cinA Streptococcus mitis SK321

44.762

100

0.459
  cinA Streptococcus pneumoniae Rx1

44.524

100

0.456
  cinA Streptococcus pneumoniae R6

44.524

100

0.456
  cinA Streptococcus pneumoniae D39

44.286

100

0.454
  cinA Streptococcus mitis NCTC 12261

44.286

100

0.454
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38