Detailed information NTG0617369

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: LIS79_RS16980
• Genome accession: NZ_CP085389
• Coordinates: 3246619..3247305 (-)
• Length: 228 a.a.
• NCBI ID: WP_169476072.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain CMF5
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3241619..3252305

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIS79_RS16945 (LIS79_16955)	fliW	3241755..3242189 (-)	435	WP_007499985.1	flagellar assembly protein FliW	-
LIS79_RS16950 (LIS79_16960)	-	3242218..3242796 (-)	579	WP_035701576.1	DUF6470 family protein	-
LIS79_RS16955 (LIS79_16965)	flgL	3242843..3243754 (-)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
LIS79_RS16960 (LIS79_16970)	flgK	3243763..3245283 (-)	1521	WP_017368142.1	flagellar hook-associated protein FlgK	-
LIS79_RS16965 (LIS79_16975)	-	3245299..3245781 (-)	483	WP_017357865.1	flagellar protein FlgN	-
LIS79_RS16970 (LIS79_16980)	flgM	3245800..3246063 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
LIS79_RS16975 (LIS79_16985)	-	3246143..3246562 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
LIS79_RS16980 (LIS79_16990)	comFC	3246619..3247305 (-)	687	WP_169476072.1	ComF family protein	Machinery gene
LIS79_RS16985 (LIS79_16995)	-	3247302..3247595 (-)	294	WP_035701582.1	competence protein ComFB	-
LIS79_RS16990 (LIS79_17000)	comFA	3247660..3248787 (-)	1128	WP_074041808.1	DEAD/DEAH box helicase	Machinery gene
LIS79_RS16995 (LIS79_17005)	-	3249159..3250001 (-)	843	WP_024719242.1	DegV family protein	-
LIS79_RS17000 (LIS79_17010)	degU	3250213..3250902 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
LIS79_RS17005 (LIS79_17015)	degS	3250967..3252142 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26101.61 Da
• Isoelectric Point: 10.2393

>NTDB_id=617369 LIS79_RS16980 WP_169476072.1 3246619..3247305(-) (comFC) [Bacillus altitudinis strain CMF5]
MICPICESHFVAAFTWKSFLLLNEDRLCVACKNHLMKIQGPTCPKCGRAQSNDQLCQDCSRWNKRRDFAEILVMNRSVYA
YNDFMKDILARFKFRGDTALADLFKKDVQSAFKRSFSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVH
QSKQSKKRKNERLHQQNLFQLRQSNPIVLKDVVLIDDIYTTGATVYHAAKILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=617369 LIS79_RS16980 WP_169476072.1 3246619..3247305(-) (comFC) [Bacillus altitudinis strain CMF5]
TTGATTTGTCCAATTTGTGAGAGCCATTTTGTGGCTGCTTTTACATGGAAATCATTCCTACTATTAAATGAAGATCGTTT
ATGTGTAGCATGTAAGAACCACCTGATGAAGATTCAAGGTCCTACTTGTCCTAAATGCGGAAGAGCCCAATCAAATGATC
AATTGTGTCAGGATTGTTCAAGGTGGAATAAACGACGGGATTTTGCTGAGATTCTTGTGATGAATCGATCTGTTTATGCT
TACAACGACTTTATGAAAGATATTCTAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGA
TGTACAGTCAGCGTTTAAACGTTCTTTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAA
AGGAAAGAGGATTCAATCAGTCAATGATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACAT
CAAAGTAAGCAGTCTAAGAAAAGAAAAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGAT
CGTTCTAAAGGATGTCGTATTAATCGATGACATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAG
AAGCAGGCGCCAAAAGTGTTTCCTCTTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (161-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.13	100	0.496
comFC/cflB	Streptococcus mitis SK321	38.428	100	0.386
comFC/cflB	Streptococcus mitis NCTC 12261	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae R6	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae TIGR4	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae Rx1	37.118	100	0.373
comFC/cflB	Streptococcus pneumoniae D39	37.118	100	0.373