Detailed information NTG0617372

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: LIS79_RS17005
• Genome accession: NZ_CP085389
• Coordinates: 3250967..3252142 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain CMF5
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3245967..3257142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LIS79_RS16975 (LIS79_16985)	-	3246143..3246562 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
LIS79_RS16980 (LIS79_16990)	comFC	3246619..3247305 (-)	687	WP_169476072.1	ComF family protein	Machinery gene
LIS79_RS16985 (LIS79_16995)	-	3247302..3247595 (-)	294	WP_035701582.1	competence protein ComFB	-
LIS79_RS16990 (LIS79_17000)	comFA	3247660..3248787 (-)	1128	WP_074041808.1	DEAD/DEAH box helicase	Machinery gene
LIS79_RS16995 (LIS79_17005)	-	3249159..3250001 (-)	843	WP_024719242.1	DegV family protein	-
LIS79_RS17000 (LIS79_17010)	degU	3250213..3250902 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
LIS79_RS17005 (LIS79_17015)	degS	3250967..3252142 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
LIS79_RS17010 (LIS79_17020)	-	3252364..3253032 (+)	669	WP_017357860.1	YigZ family protein	-
LIS79_RS17015 (LIS79_17025)	-	3253017..3254108 (+)	1092	WP_025208065.1	LCP family protein	-
LIS79_RS17020 (LIS79_17030)	-	3254145..3255212 (-)	1068	WP_007499956.1	MraY family glycosyltransferase	-
LIS79_RS17025 (LIS79_17035)	-	3255347..3256594 (-)	1248	WP_051632364.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=617372 LIS79_RS17005 WP_003213166.1 3250967..3252142(-) (degS) [Bacillus altitudinis strain CMF5]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=617372 LIS79_RS17005 WP_003213166.1 3250967..3252142(-) (degS) [Bacillus altitudinis strain CMF5]
ATGACAACACCTAAAATGGATCCGAAGTTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGTAAGGA
CGAAGTATTTAGAATCGGCGAACAGTCCCGTCAACAATATGAAAGCCTAGTAGAAGAGCTCAAGCAAATTAAACAGCAAG
TCAACGAAGTCATTGATTTTGGGGATAAACTAGAAGTACATACGAGACATGCTAGAAATCGTTTATCTGAAGTCAGCAGA
AACTTCAACAAATTCAGCGAAGAAGAAATACGAGAAGCCTATGAAAAAGCACATAACCTGCAAGTAGAATTGACCATGAT
CCAGCAGCGCGAAAAACAGCTGAGGGAAAGAAGAGATGATCTCGAAAGACGATTGTTAAGCTTACAAGACGTCATTGAAC
GTTCAGAAACGCTTGTGAGCCAGATCACGGTCGTCCTCAACTACTTGAACCAAGATTTACGTCAGGTCGGTGTTTTACTT
GAAGATGCTCAGGCAAAACAAGATTTTGGACTAAGAATTATTGAAGCCCAGGAAGAAGAGCGCAAAAGGGTATCACGAGA
AATCCATGATGGACCTGCTCAGATGCTGGCAAACGTGATGATGCGTTCAGAACTAATTGAACGAATTTTTAGAGACCGTG
GAACAGAAGAAGGATTTAAAGAAATTAGAAGTCTAAGACAGAATGTGCGAAATGCACTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCGATGGCTTTAGATGATTTGGGTCTCATTCCGACACTGCGAAAATACTTAAACACAATTGAAGAATA
TGATGGAAAAACCAAAATTACGTTCCAGTGCTTAGGTGATACTGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TATTTAGACTAGCTCAAGAAGCTGTCACAAATTCTTTAAAGCATTCTGAAGCTGAAGAAATCTCTGTGAAGGTTGAAGTG
ACGAAAGACTTTGTCACCTTAATTATCAAAGACGATGGAAAAGGCTTTGATATGAAGGATGTTAAAACAAATAAAAACAA
ATCCTTTGGGTTACTTGGTATGAAAGAGCGCGTAGACTTACTAGAAGGTAAAATGACCATAGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTAGAGTACCGTTAACATTACAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841