Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LIS79_RS17000 Genome accession   NZ_CP085389
Coordinates   3250213..3250902 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain CMF5     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245213..3255902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIS79_RS16965 (LIS79_16975) - 3245299..3245781 (-) 483 WP_017357865.1 flagellar protein FlgN -
  LIS79_RS16970 (LIS79_16980) flgM 3245800..3246063 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  LIS79_RS16975 (LIS79_16985) - 3246143..3246562 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  LIS79_RS16980 (LIS79_16990) comFC 3246619..3247305 (-) 687 WP_169476072.1 ComF family protein Machinery gene
  LIS79_RS16985 (LIS79_16995) - 3247302..3247595 (-) 294 WP_035701582.1 competence protein ComFB -
  LIS79_RS16990 (LIS79_17000) comFA 3247660..3248787 (-) 1128 WP_074041808.1 DEAD/DEAH box helicase Machinery gene
  LIS79_RS16995 (LIS79_17005) - 3249159..3250001 (-) 843 WP_024719242.1 DegV family protein -
  LIS79_RS17000 (LIS79_17010) degU 3250213..3250902 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  LIS79_RS17005 (LIS79_17015) degS 3250967..3252142 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  LIS79_RS17010 (LIS79_17020) - 3252364..3253032 (+) 669 WP_017357860.1 YigZ family protein -
  LIS79_RS17015 (LIS79_17025) - 3253017..3254108 (+) 1092 WP_025208065.1 LCP family protein -
  LIS79_RS17020 (LIS79_17030) - 3254145..3255212 (-) 1068 WP_007499956.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=617371 LIS79_RS17000 WP_008348273.1 3250213..3250902(-) (degU) [Bacillus altitudinis strain CMF5]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=617371 LIS79_RS17000 WP_008348273.1 3250213..3250902(-) (degU) [Bacillus altitudinis strain CMF5]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACACGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAATGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996