Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SANR_RS10945 Genome accession   NC_022239
Coordinates   2231624..2232814 (+) Length   396 a.a.
NCBI ID   WP_003032033.1    Uniprot ID   I0S836
Organism   Streptococcus anginosus C238     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2226624..2237814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS10920 (SANR_2121) comE/comE2 2228434..2229183 (-) 750 WP_003038257.1 competence system response regulator transcription factor ComE Regulator
  SANR_RS10925 (SANR_2122) comD/comD2 2229183..2230505 (-) 1323 WP_003038254.1 GHKL domain-containing protein Regulator
  SANR_RS11380 (SANR_2123) - 2230520..2230669 (-) 150 WP_003038250.1 bacteriocin -
  SANR_RS10940 rlmH 2230951..2231430 (-) 480 WP_004225060.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SANR_RS10945 (SANR_2125) htrA 2231624..2232814 (+) 1191 WP_003032033.1 S1C family serine protease Regulator
  SANR_RS10950 (SANR_2126) spo0J 2232869..2233636 (+) 768 WP_003038259.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 396 a.a.        Molecular weight: 41651.61 Da        Isoelectric Point: 9.4264

>NTDB_id=61698 SANR_RS10945 WP_003032033.1 2231624..2232814(+) (htrA) [Streptococcus anginosus C238]
MKNSSNFTKKLLLLFMVLAIGFIGGLLGNLTSSKLSTNSSTTTKVNQVTTAYKNTNSTTQAVSKVKDAVVSVITYANNNS
QNSVFGNDDSNNNNDNSQQVASEGSGVIYKKDGKYAYLVTNTHVISGAKKVDIRLADGNKVPGEIVGSDTYSDISVVRIS
ADKVKSVAEFGDSSKLTVGETAIAIGSPLGSNYANTVTQGIISSLNRNVSLKSEDGQTISTQAIQTDTAINPGNSGGPLV
NIQGQVIGITSSKIASNGGTSVEGLGFAIPSNDVINIINQLEANGTVTRPALGIQMIDITNLSSSDLSRLKLPSKITSGV
VVRSAQSGMPAEGKLQKYDVITKVDDKEISSTSDLQSALYKHSIGDNIKITFYRDGKETTTTIKLTKSTKDLDSNN

Nucleotide


Download         Length: 1191 bp        

>NTDB_id=61698 SANR_RS10945 WP_003032033.1 2231624..2232814(+) (htrA) [Streptococcus anginosus C238]
ATGAAAAACTCTTCAAATTTCACAAAAAAATTGTTATTGCTTTTCATGGTCTTAGCTATAGGTTTTATCGGTGGTTTACT
TGGAAACTTAACTTCATCTAAATTATCAACAAATAGCTCTACAACGACTAAAGTTAATCAAGTTACTACTGCTTATAAAA
ATACAAATTCCACAACACAAGCTGTGAGTAAAGTGAAAGATGCTGTGGTATCCGTTATTACCTATGCTAATAATAATTCA
CAAAACAGCGTGTTTGGAAATGATGATTCAAATAATAACAATGATAATTCTCAACAAGTAGCTAGCGAAGGATCTGGGGT
TATTTATAAAAAAGATGGAAAATACGCTTACTTAGTAACCAATACTCACGTTATCAGTGGTGCTAAAAAAGTTGACATTC
GTTTAGCAGATGGTAATAAAGTTCCTGGAGAAATTGTAGGGTCAGATACTTATTCTGATATCTCCGTTGTTCGAATTAGT
GCTGATAAAGTAAAATCAGTTGCTGAATTTGGAGATTCTAGTAAATTGACGGTTGGTGAGACAGCTATTGCGATTGGAAG
TCCGCTCGGATCAAATTACGCTAACACTGTGACGCAAGGAATTATTTCTAGTTTAAATCGTAATGTTTCTTTAAAATCTG
AAGACGGACAAACGATTTCAACACAAGCTATTCAAACAGACACAGCTATTAACCCAGGGAACTCTGGTGGACCACTTGTG
AATATCCAAGGACAAGTAATTGGTATTACTTCAAGTAAAATAGCTAGCAACGGCGGAACTTCGGTTGAAGGATTAGGATT
TGCTATTCCATCTAATGATGTTATAAACATTATTAACCAGTTAGAAGCAAATGGAACTGTTACACGACCAGCTCTAGGAA
TCCAAATGATTGACATCACTAATCTGTCTAGTTCAGATCTATCACGCTTAAAACTTCCATCAAAAATAACTAGTGGAGTT
GTCGTACGTTCAGCTCAATCTGGAATGCCAGCTGAAGGAAAACTTCAAAAATATGATGTGATTACAAAAGTAGATGATAA
AGAAATTTCTTCAACAAGTGATTTACAATCCGCTTTATACAAACATTCAATTGGTGACAACATAAAAATCACTTTCTATC
GTGATGGAAAAGAAACTACTACTACCATTAAGCTTACAAAATCTACAAAAGATTTAGATTCAAATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB I0S836

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus gordonii str. Challis substr. CH1

75.561

100

0.765

  htrA Streptococcus mitis NCTC 12261

72.544

100

0.727

  htrA Streptococcus pneumoniae Rx1

72.292

100

0.725

  htrA Streptococcus pneumoniae D39

72.292

100

0.725

  htrA Streptococcus pneumoniae R6

72.292

100

0.725

  htrA Streptococcus pneumoniae TIGR4

72.292

100

0.725

  htrA Streptococcus mutans UA159

55.471

99.242

0.551


Multiple sequence alignment