Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LJA36_RS00910 Genome accession   NZ_CP085282
Coordinates   299210..300460 (-) Length   416 a.a.
NCBI ID   WP_039251473.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain TPS17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 294210..305460
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJA36_RS00895 rny 294796..296355 (-) 1560 WP_003154140.1 ribonuclease Y -
  LJA36_RS00900 - 296648..297829 (-) 1182 WP_039251468.1 serine hydrolase domain-containing protein -
  LJA36_RS00905 recA 297996..299039 (-) 1044 WP_039251470.1 recombinase RecA Machinery gene
  LJA36_RS00910 cinA 299210..300460 (-) 1251 WP_039251473.1 competence/damage-inducible protein A Machinery gene
  LJA36_RS00915 pgsA 300478..301059 (-) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LJA36_RS00920 - 301132..302028 (-) 897 WP_007409820.1 RodZ domain-containing protein -
  LJA36_RS00925 - 302047..302838 (-) 792 WP_007409819.1 YmfK family protein -
  LJA36_RS00930 - 302966..303223 (-) 258 WP_003154150.1 DUF3243 domain-containing protein -
  LJA36_RS00935 - 303298..304026 (-) 729 WP_039251477.1 SDR family oxidoreductase -
  LJA36_RS00940 - 304086..305372 (-) 1287 WP_039251479.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44996.28 Da        Isoelectric Point: 5.1492

>NTDB_id=616860 LJA36_RS00910 WP_039251473.1 299210..300460(-) (cinA) [Bacillus amyloliquefaciens strain TPS17]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGIAAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=616860 LJA36_RS00910 WP_039251473.1 299210..300460(-) (cinA) [Bacillus amyloliquefaciens strain TPS17]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTGAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGTCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTCGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTGCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

90.144

100

0.901
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387