Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG333_RS10005 Genome accession   NZ_CP085270
Coordinates   1940426..1941670 (+) Length   414 a.a.
NCBI ID   WP_404470406.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-536     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1935426..1946670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG333_RS09975 (LG333_09925) yfmH 1935426..1936709 (+) 1284 WP_404470402.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LG333_RS09980 (LG333_09930) ymfI 1936773..1937489 (+) 717 WP_404470403.1 elongation factor P 5-aminopentanone reductase -
  LG333_RS09985 (LG333_09935) - 1937560..1937817 (+) 258 WP_010193278.1 DUF3243 domain-containing protein -
  LG333_RS09990 (LG333_09940) - 1937957..1938748 (+) 792 WP_010193276.1 DUF3388 domain-containing protein -
  LG333_RS09995 (LG333_09945) - 1938770..1939669 (+) 900 WP_404470404.1 helix-turn-helix domain-containing protein -
  LG333_RS10000 (LG333_09950) pgsA 1939817..1940401 (+) 585 WP_223493376.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG333_RS10005 (LG333_09955) cinA 1940426..1941670 (+) 1245 WP_404470406.1 competence/damage-inducible protein A Machinery gene
  LG333_RS10010 (LG333_09960) recA 1941984..1943024 (+) 1041 WP_223493378.1 recombinase RecA Machinery gene
  LG333_RS10015 (LG333_09965) rny 1943328..1944890 (+) 1563 WP_404470553.1 ribonuclease Y -
  LG333_RS10020 (LG333_09970) - 1944993..1945787 (+) 795 WP_404352000.1 TIGR00282 family metallophosphoesterase -
  LG333_RS10025 (LG333_09975) spoVS 1945935..1946195 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45486.01 Da        Isoelectric Point: 5.2083

>NTDB_id=616761 LG333_RS10005 WP_404470406.1 1940426..1941670(+) (cinA) [Sutcliffiella horikoshii strain ABH-536]
MIRNAEIIAVGSELLLGQICNTNAQFLSKQLAELGINVFYHTVVGDNPSRLEEVITTAKQRSNLLIFTGGLGPTKDDLTK
ETIAKVLDKQLVMDEEALTNIQDYYKKSQRVMSENNKKQALVLEGSSILVNEFGMAPGMALTEGSHTYMLLPGPPKELQP
MFSVHGREYLLDKLGAKEQIVSKVLRFFGIGESQLETDIEDIIDKQTNPTIAPLAGDNEVTLRLTAKHQSMVEANRLIDQ
CEKEILDRVGEFFFGYDEDTIYSVLFEKIQKSHYTLSSAESLTGGLFSEKMTSFTGASEVIEGAIVSYTNSVKENVLGVK
KQTLETDGAVSEQTAKEMAIGVKKLLQTDIGISFTGVAGPGTMDNQPVGTVFIGIALPNGETTVHKIHLAGTRDGIRHRS
AKYGCHYLLKELFK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=616761 LG333_RS10005 WP_404470406.1 1940426..1941670(+) (cinA) [Sutcliffiella horikoshii strain ABH-536]
ATGATCAGAAATGCAGAGATTATTGCCGTTGGCTCTGAATTACTGTTGGGACAAATCTGTAATACAAATGCCCAGTTTCT
TTCAAAGCAGCTTGCCGAGTTGGGAATCAACGTCTTTTATCATACGGTAGTCGGAGATAACCCTTCTAGACTTGAAGAAG
TAATAACAACAGCAAAACAACGGTCAAATCTTCTAATATTCACCGGAGGACTTGGCCCGACTAAAGATGACCTGACAAAG
GAAACAATTGCCAAGGTACTTGATAAACAATTGGTCATGGATGAAGAAGCTCTGACCAACATTCAGGATTATTATAAAAA
ATCACAACGTGTGATGAGTGAAAACAATAAAAAGCAAGCCCTTGTTTTAGAAGGCTCCTCTATTTTGGTAAACGAATTTG
GAATGGCCCCGGGGATGGCGTTGACTGAAGGTTCACATACATACATGCTTTTACCTGGTCCACCTAAAGAACTTCAACCA
ATGTTTTCAGTCCATGGCAGAGAATACCTGCTAGATAAGCTTGGAGCAAAAGAGCAGATCGTCTCCAAAGTCCTTCGCTT
TTTTGGTATTGGCGAATCACAATTGGAAACAGATATTGAAGATATCATTGACAAACAGACAAATCCGACCATTGCTCCGC
TAGCAGGGGACAATGAGGTTACACTAAGATTAACCGCTAAGCACCAATCAATGGTCGAAGCAAATCGTTTAATAGATCAA
TGCGAAAAAGAAATCTTGGATAGAGTGGGAGAATTCTTTTTTGGATATGACGAAGACACCATTTACTCCGTACTATTTGA
AAAAATCCAAAAGTCCCACTACACTCTGAGCAGTGCCGAGAGTCTTACCGGCGGTTTGTTCTCTGAGAAGATGACAAGCT
TCACCGGTGCTTCCGAAGTGATTGAAGGTGCCATAGTCAGTTATACTAATAGCGTGAAGGAAAATGTTCTGGGAGTTAAA
AAACAAACACTTGAAACAGATGGAGCAGTAAGTGAGCAGACTGCAAAAGAAATGGCAATCGGCGTGAAAAAATTGCTGCA
AACAGATATCGGTATCAGTTTTACAGGAGTTGCAGGTCCTGGAACGATGGATAATCAACCTGTTGGTACAGTGTTTATCG
GAATTGCACTTCCGAACGGAGAAACTACCGTTCATAAAATTCATCTAGCAGGAACGAGAGACGGCATAAGACATAGATCA
GCAAAATATGGCTGCCACTATCTACTGAAAGAATTGTTTAAGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.195

99.034

0.616
  cinA Streptococcus mitis SK321

45.346

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.346

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.346

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.459
  cinA Streptococcus pneumoniae R6

45.346

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.457
  cinA Streptococcus mutans UA159

43.75

96.618

0.423
  cinA Streptococcus suis isolate S10

40.306

94.686

0.382