NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	JIW86_RS26335	Genome accession	NZ_CP102509
Coordinates	5671847..5672518 (+)	Length	223 a.a.
NCBI ID	WP_285443927.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_00162
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5666847..5677518

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JIW86_RS26300 (JIW86_26300)	-	5667588..5668037 (+)	450	WP_257556326.1	HD domain-containing protein	-
JIW86_RS26305 (JIW86_26305)	-	5668189..5668383 (+)	195	WP_215140028.1	hypothetical protein	-
JIW86_RS26310 (JIW86_26310)	-	5668373..5668855 (-)	483	WP_257556327.1	DUF4231 domain-containing protein	-
JIW86_RS26325 (JIW86_26325)	tig	5669497..5670885 (+)	1389	WP_257556328.1	trigger factor	-
JIW86_RS26330 (JIW86_26330)	-	5671162..5671779 (+)	618	WP_215140031.1	ATP-dependent Clp protease proteolytic subunit	-
JIW86_RS26335 (JIW86_26335)	clpP	5671847..5672518 (+)	672	WP_285443927.1	ATP-dependent Clp protease proteolytic subunit	Regulator
JIW86_RS26340 (JIW86_26340)	clpX	5672672..5673958 (+)	1287	WP_215140032.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JIW86_RS26345 (JIW86_26345)	-	5674126..5674401 (+)	276	WP_257556329.1	hypothetical protein	-
JIW86_RS26350 (JIW86_26350)	-	5674460..5675377 (-)	918	WP_257556330.1	hypothetical protein	-

Sequence

Protein

Download Length: 223 a.a. Molecular weight: 24410.81 Da Isoelectric Point: 4.6747

                                >NTDB_id=616759 JIW86_RS26335 WP_285443927.1 5671847..5672518(+) (clpP) [Streptomyces sp. NBC_00162]

MVNTQMHMNNLSPASGLYTGAQVDNRYVIPRFVERTSQGVREYDPYAKLFEERIIFLGVQIDDASANDVMAQLLCLESMD

PDRDISIYINSPGGSFTALTAIYDTMQFVKPDISTVCMGQAASAAAVLLAAGAPGKRMALPNARVLIHQPSGGTGREQLS

DLEIAANEILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQVVSTRKSSA

Nucleotide

Download Length: 672 bp

                                >NTDB_id=616759 JIW86_RS26335 WP_285443927.1 5671847..5672518(+) (clpP) [Streptomyces sp. NBC_00162]

ATGGTGAACACCCAGATGCACATGAACAACCTCTCTCCCGCGAGCGGCCTCTACACCGGCGCTCAGGTGGACAACCGCTA

CGTCATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCA

TCATCTTCCTCGGCGTGCAGATCGACGACGCCTCGGCGAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC

CCGGACCGGGACATCTCGATCTACATCAACAGCCCCGGCGGCTCCTTCACCGCGCTGACGGCCATCTACGACACGATGCA

GTTCGTGAAGCCGGACATCTCCACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGTGCCC

CGGGCAAGCGCATGGCCCTGCCGAACGCCCGCGTGCTGATCCACCAGCCGTCCGGCGGCACCGGCCGTGAGCAGCTCTCC

GACCTGGAGATCGCGGCCAATGAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCC

GATCGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACTGCCGAGGACGCGCTGGCGTACGGCCTGATCGACC

AGGTCGTCTCCACCCGCAAGAGCTCGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	53.684	85.202	0.457
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	51.596	84.305	0.435
clpP	Streptococcus mutans UA159	46.842	85.202	0.399
clpP	Streptococcus thermophilus LMD-9	45.361	86.996	0.395
clpP	Streptococcus pyogenes MGAS315	45.361	86.996	0.395
clpP	Streptococcus thermophilus LMG 18311	45.361	86.996	0.395
clpP	Streptococcus pyogenes JRS4	45.361	86.996	0.395
clpP	Streptococcus pneumoniae D39	46.073	85.65	0.395
clpP	Streptococcus pneumoniae Rx1	46.073	85.65	0.395
clpP	Streptococcus pneumoniae R6	46.073	85.65	0.395
clpP	Streptococcus pneumoniae TIGR4	46.073	85.65	0.395
clpP	Lactococcus lactis subsp. cremoris KW2	44.503	85.65	0.381
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	43.455	85.65	0.372

Detailed information NTG0616759