Detailed information NTG0616760

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: JIW86_RS26340
• Genome accession: NZ_CP102509
• Coordinates: 5672672..5673958 (+)
• Length: 428 a.a.
• NCBI ID: WP_215140032.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_00162
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 5667672..5678958

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JIW86_RS26305 (JIW86_26305)	-	5668189..5668383 (+)	195	WP_215140028.1	hypothetical protein	-
JIW86_RS26310 (JIW86_26310)	-	5668373..5668855 (-)	483	WP_257556327.1	DUF4231 domain-containing protein	-
JIW86_RS26325 (JIW86_26325)	tig	5669497..5670885 (+)	1389	WP_257556328.1	trigger factor	-
JIW86_RS26330 (JIW86_26330)	-	5671162..5671779 (+)	618	WP_215140031.1	ATP-dependent Clp protease proteolytic subunit	-
JIW86_RS26335 (JIW86_26335)	clpP	5671847..5672518 (+)	672	WP_285443927.1	ATP-dependent Clp protease proteolytic subunit	Regulator
JIW86_RS26340 (JIW86_26340)	clpX	5672672..5673958 (+)	1287	WP_215140032.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
JIW86_RS26345 (JIW86_26345)	-	5674126..5674401 (+)	276	WP_257556329.1	hypothetical protein	-
JIW86_RS26350 (JIW86_26350)	-	5674460..5675377 (-)	918	WP_257556330.1	hypothetical protein	-
JIW86_RS26355 (JIW86_26355)	-	5675504..5678125 (+)	2622	WP_257556331.1	valine--tRNA ligase	-

Sequence

Protein

• Length: 428 a.a.
• Molecular weight: 46954.85 Da
• Isoelectric Point: 4.7699

>NTDB_id=616760 JIW86_RS26340 WP_215140032.1 5672672..5673958(+) (clpX) [Streptomyces sp. NBC_00162]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGAQGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFAGLEKIIESRAGSKGIGFGATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide

• Length: 1287 bp

>NTDB_id=616760 JIW86_RS26340 WP_215140032.1 5672672..5673958(+) (clpX) [Streptomyces sp. NBC_00162]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCAGGGCCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTCCGGTGGGAGGAACTCCCCAAGCCCCGTGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTCGCGGTCTACAACCACTACAAGCGGGTCCAGGCCGGCGAGAACGGCGGCGCGCAGGGCCG
GGACGACGCGATCGAACTCGCGAAGTCCAACATCCTGCTGCTCGGCCCCACCGGCTCCGGCAAGACGCTGCTCGCGCAGA
CGCTCGCCCGCATGCTCAACGTTCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTGAAGCTGATCCAGGCGGCGGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTTCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACGGCCTCCGTCCCGCCGCAGGGTGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTCTTCATCGTGGGCGGCGCCTTCGCCGGCCTGGAGAAGATCATCGAGTCGCGTGCGGGTTC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCCAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGCCTCCCCGTGCTGACCTCCGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGTAACGCCCTGGTGAAGCAGTACCAGCGACTGTTTGAACTCGACGGTGT
GGAACTGGACTTCGAGCGGGAAGCCCTCGAAGCCATCGCCGACCAGGCGATCCTCCGCCAGACGGGCGCGCGCGGCCTGC
GCGCCATCATGGAGGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCCCGCATCGTCCCGAAGGACCAGGGCCCGCAGGAGAAGTC
GGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.925	0.6
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.771	96.028	0.516