Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SANR_RS04790 Genome accession   NC_022239
Coordinates   966633..967337 (+) Length   234 a.a.
NCBI ID   WP_020999584.1    Uniprot ID   -
Organism   Streptococcus anginosus C238     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 961633..972337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SANR_RS04770 (SANR_0935) - 961994..963199 (+) 1206 WP_003034551.1 multidrug efflux MFS transporter -
  SANR_RS11130 (SANR_0936) rpmG 963183..963332 (+) 150 WP_003034401.1 50S ribosomal protein L33 -
  SANR_RS04775 (SANR_0937) secG 963372..963605 (+) 234 WP_003024744.1 preprotein translocase subunit SecG -
  SANR_RS04780 (SANR_0938) rnr 963696..966035 (+) 2340 WP_003034491.1 ribonuclease R -
  SANR_RS04785 (SANR_0939) smpB 965998..966465 (+) 468 WP_003034458.1 SsrA-binding protein SmpB -
  SANR_RS04790 (SANR_0940) comEA/celA/cilE 966633..967337 (+) 705 WP_020999584.1 helix-hairpin-helix domain-containing protein Machinery gene
  SANR_RS04795 (SANR_0941) comEC/celB 967321..969549 (+) 2229 WP_020999585.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SANR_RS04800 (SANR_0942) - 969630..970322 (+) 693 WP_020999586.1 DUF805 domain-containing protein -
  SANR_RS04805 (SANR_0943) - 970827..971813 (+) 987 WP_003034384.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25358.73 Da        Isoelectric Point: 9.4255

>NTDB_id=61674 SANR_RS04790 WP_020999584.1 966633..967337(+) (comEA/celA/cilE) [Streptococcus anginosus C238]
MLEVIIKKIKEYKILVGLSLIGLIIAGFFLMTSKSARQSNVGDIAQEATNAKLERKETSTETKKKQQKEETESQKNLASE
ELEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVIYVAAMGENVTNAATNNGQTLTT
DTNGTAAQKGNKVNLNKANLSDLQSISGIGQKRAQDILDYRESNGKFNSVDDLKNVSGVGAKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=61674 SANR_RS04790 WP_020999584.1 966633..967337(+) (comEA/celA/cilE) [Streptococcus anginosus C238]
ATGTTAGAGGTAATCATCAAAAAAATAAAAGAGTATAAAATTTTAGTTGGTTTAAGCCTGATTGGTTTGATCATAGCAGG
ATTTTTTCTGATGACTAGTAAATCTGCTAGACAATCTAATGTAGGAGATATTGCACAAGAGGCCACAAATGCAAAACTAG
AACGGAAAGAAACTTCAACTGAAACGAAGAAAAAACAACAGAAAGAAGAAACAGAATCTCAAAAGAATTTAGCGAGTGAA
GAATTGGAATTTTTAACTGTAGATGTTAAAGGTGCTGTTAAAAATCCAGGTATTTATCAATTAAAAAAAACAAGCCGAAT
CAATGATGCTATCCAAAAAGCGGGTGGACTAACGACAGACGCTGACAGCAAATCTATCAATTTGGCTCAAAAACTAACAG
ATGAGGCTGTGATTTATGTGGCAGCTATGGGTGAAAATGTAACAAATGCTGCAACTAATAATGGACAAACTTTAACGACA
GATACCAATGGAACTGCGGCACAAAAAGGGAATAAGGTCAATCTAAATAAGGCCAATTTGTCTGATTTACAGTCTATTTC
TGGTATTGGACAAAAGCGCGCCCAAGATATTTTAGATTATCGTGAGTCAAACGGGAAATTTAATTCTGTTGATGACTTGA
AAAATGTATCAGGAGTAGGCGCCAAAACACTAGAAAAATTGAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(87-140)

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

51.073

99.573

0.509
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.073

99.573

0.509
  comEA/celA/cilE Streptococcus mitis SK321

51.073

99.573

0.509
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.644

99.573

0.504
  comEA/celA/cilE Streptococcus pneumoniae D39

50.644

99.573

0.504
  comEA/celA/cilE Streptococcus pneumoniae R6

50.644

99.573

0.504
  comEA Streptococcus thermophilus LMD-9

43.22

100

0.436
  comEA Lactococcus lactis subsp. cremoris KW2

38.197

99.573

0.38

Multiple sequence alignment