Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG298_RS09620 Genome accession   NZ_CP085255
Coordinates   1847863..1849113 (+) Length   416 a.a.
NCBI ID   WP_226618991.1    Uniprot ID   -
Organism   Cytobacillus firmus strain ABH-509     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1842863..1854113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG298_RS09595 (LG298_09510) ymfI 1843705..1844427 (+) 723 WP_197214893.1 elongation factor P 5-aminopentanone reductase -
  LG298_RS09600 (LG298_09515) - 1844543..1844800 (+) 258 WP_061791010.1 DUF3243 domain-containing protein -
  LG298_RS09605 (LG298_09520) - 1845034..1845825 (+) 792 WP_035330727.1 YmfK family protein -
  LG298_RS09610 (LG298_09525) - 1845847..1846752 (+) 906 WP_197214894.1 RodZ domain-containing protein -
  LG298_RS09615 (LG298_09530) pgsA 1847258..1847836 (+) 579 WP_035330725.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG298_RS09620 (LG298_09535) cinA 1847863..1849113 (+) 1251 WP_226618991.1 competence/damage-inducible protein A Machinery gene
  LG298_RS09625 (LG298_09540) recA 1849387..1850427 (+) 1041 WP_048008962.1 recombinase RecA Machinery gene
  LG298_RS09630 (LG298_09545) rny 1850796..1852358 (+) 1563 WP_404323911.1 ribonuclease Y -
  LG298_RS09635 (LG298_09550) - 1852488..1853285 (+) 798 WP_404323913.1 TIGR00282 family metallophosphoesterase -
  LG298_RS09640 (LG298_09555) spoVS 1853618..1853878 (+) 261 WP_009330666.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45311.88 Da        Isoelectric Point: 4.8074

>NTDB_id=616578 LG298_RS09620 WP_226618991.1 1847863..1849113(+) (cinA) [Cytobacillus firmus strain ABH-509]
MNAEIIAVGSELLLGQIVNTNARFLSRQLAELGINVFYHTVVGDNPERLRSVIKIAESRSDLIVFTGGLGPTKDDLTKET
IARHLGKELVMDEQALESIQLYFKRTNREMTENNKKQALVLEDAQVLPNEHGMAPGMIADSGRHVFMLLPGPPNEMEPMF
LKHAFPALQSKLGTEDVIVSRVLHFFGIGEAMLETEIEDIIDAQSNPTIAPLASDGEVTLRLTAKHSQPNTAMMLINEAE
TKILERVGEYFYGYDDTSLMYELTKLIKESSMTISAAESLTGGMFQEEFTSIPGAGGLLKGGVVCYTNEVKAEVLKVRKA
TIDNDGVVSAQCAAELAENVASLTNADIGISFTGVAGPDELEGNPVGTVYIGIWIKGRPVQTEKLNLGGTRAANRVRTVK
YGCHFLIKALKETQNA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=616578 LG298_RS09620 WP_226618991.1 1847863..1849113(+) (cinA) [Cytobacillus firmus strain ABH-509]
ATGAATGCTGAAATTATTGCTGTCGGGTCTGAGCTTTTGCTTGGACAAATCGTTAATACAAATGCCCGCTTTCTCTCCCG
GCAGCTTGCTGAACTGGGCATTAACGTTTTTTACCATACAGTGGTTGGAGATAACCCAGAGCGCCTGAGATCGGTGATCA
AAATAGCCGAAAGCCGTTCTGATTTGATCGTCTTCACGGGCGGCCTGGGACCCACAAAGGATGATTTAACAAAAGAAACA
ATTGCCCGCCATCTTGGCAAAGAGCTCGTCATGGACGAACAGGCGCTTGAATCTATACAGCTGTATTTTAAACGCACCAA
CAGAGAGATGACTGAGAATAATAAAAAACAGGCCCTGGTTCTTGAGGATGCACAGGTGCTTCCTAATGAGCATGGAATGG
CACCCGGAATGATTGCCGATAGTGGCCGGCATGTTTTCATGCTTCTTCCGGGGCCGCCAAACGAGATGGAGCCGATGTTC
CTTAAACATGCCTTTCCAGCCCTGCAATCCAAGCTGGGAACCGAGGATGTAATTGTTTCCCGGGTGCTGCACTTCTTCGG
GATTGGAGAAGCCATGCTGGAAACGGAGATTGAAGATATTATTGATGCTCAGAGCAATCCAACCATTGCTCCGCTTGCAT
CTGATGGGGAAGTTACTCTGAGGCTCACAGCAAAGCATAGTCAGCCTAACACGGCCATGATGCTGATTAATGAAGCTGAA
ACTAAAATTCTGGAGCGTGTCGGCGAATACTTCTATGGCTATGATGATACTTCCCTGATGTATGAGCTCACCAAGCTGAT
TAAGGAGAGCAGCATGACTATTTCGGCAGCGGAGAGTTTAACAGGCGGCATGTTCCAGGAGGAGTTTACATCTATTCCGG
GAGCCGGCGGACTTTTAAAGGGCGGAGTGGTCTGCTACACAAACGAAGTTAAGGCTGAAGTATTAAAAGTCCGCAAAGCA
ACGATTGATAACGACGGGGTCGTCAGTGCACAGTGTGCTGCCGAGCTTGCTGAGAATGTCGCAAGCCTTACAAATGCCGA
TATCGGTATCAGCTTCACAGGTGTTGCCGGTCCGGATGAATTGGAAGGCAACCCTGTCGGTACAGTATATATAGGCATTT
GGATAAAAGGAAGGCCGGTGCAGACCGAAAAGCTGAACCTTGGAGGTACCAGGGCAGCCAATCGGGTTCGTACAGTAAAA
TACGGCTGCCATTTTCTTATTAAAGCATTAAAAGAAACTCAGAACGCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.071

98.798

0.603
  cinA Streptococcus mitis SK321

46.429

100

0.469
  cinA Streptococcus mitis NCTC 12261

45.952

100

0.464
  cinA Streptococcus pneumoniae TIGR4

45.952

100

0.464
  cinA Streptococcus pneumoniae R6

45.476

100

0.459
  cinA Streptococcus pneumoniae Rx1

45.476

100

0.459
  cinA Streptococcus mutans UA159

45.346

100

0.457
  cinA Streptococcus pneumoniae D39

45.238

100

0.457
  cinA Streptococcus suis isolate S10

38.931

94.471

0.368