Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG321_RS09850 Genome accession   NZ_CP085250
Coordinates   1929872..1931116 (+) Length   414 a.a.
NCBI ID   WP_404462306.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-541     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1924872..1936116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG321_RS09825 (LG321_09795) ymfI 1926050..1926766 (+) 717 WP_223493374.1 elongation factor P 5-aminopentanone reductase -
  LG321_RS09830 (LG321_09800) - 1926837..1927094 (+) 258 WP_010193278.1 DUF3243 domain-containing protein -
  LG321_RS09835 (LG321_09805) - 1927234..1928025 (+) 792 WP_010193276.1 DUF3388 domain-containing protein -
  LG321_RS09840 (LG321_09810) - 1928047..1928949 (+) 903 WP_404462304.1 RodZ domain-containing protein -
  LG321_RS09845 (LG321_09815) pgsA 1929097..1929681 (+) 585 WP_223493376.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG321_RS09850 (LG321_09820) cinA 1929872..1931116 (+) 1245 WP_404462306.1 competence/damage-inducible protein A Machinery gene
  LG321_RS09855 (LG321_09825) recA 1931428..1932468 (+) 1041 WP_223493378.1 recombinase RecA Machinery gene
  LG321_RS09860 (LG321_09830) rny 1932772..1934334 (+) 1563 WP_317849253.1 ribonuclease Y -
  LG321_RS09865 (LG321_09835) - 1934437..1935231 (+) 795 WP_404352000.1 TIGR00282 family metallophosphoesterase -
  LG321_RS09870 (LG321_09840) spoVS 1935379..1935639 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45506.02 Da        Isoelectric Point: 5.2109

>NTDB_id=616406 LG321_RS09850 WP_404462306.1 1929872..1931116(+) (cinA) [Sutcliffiella horikoshii strain ABH-541]
MIRNAEIIAVGSELLLGQICNTNAQFLSKQLAELGINVFYHTVVGDNPSRLEEVITTAKQRSNLLIFTGGLGPTKDDLTK
ETIAKVLDKQLVMDEEALTNIKDYYKKSQRVMSENNKKQALVLDGSSILVNEFGMAPGMALTEGSHTYMLLPGPPKELQP
MFSVHGREYLLDKLGAKEQIVSKVLRFFGIGESQLETDIEDIIDKQTNPTIAPLAGDNEVTLRLTAKHQSMDEANRLIDQ
CEKEILDRVGEFFFGYDEDTIYSVLFEKIQKSHYTLSSAESLTGGLFSEKMTSFTGASEVIEGAIVSYTNSVKENVLGVK
KQTLETDGAVSEQTAKEMAIGVKKMLQTDIGISFTGVAGPGTMDNQPVGTVFIGIALPNGETTVHKIHLAGTRDGIRHRS
AKYGCHYLLKELFK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=616406 LG321_RS09850 WP_404462306.1 1929872..1931116(+) (cinA) [Sutcliffiella horikoshii strain ABH-541]
ATGATCAGAAATGCAGAGATTATTGCCGTTGGCTCTGAATTACTGTTGGGACAAATCTGTAATACAAATGCCCAGTTTCT
TTCAAAGCAACTTGCCGAGTTGGGAATCAACGTCTTTTATCATACGGTAGTCGGAGATAACCCTTCTAGACTTGAAGAAG
TAATAACAACAGCAAAACAACGCTCAAATCTTCTAATATTCACCGGAGGACTTGGCCCGACTAAAGATGACCTGACAAAG
GAAACAATTGCTAAGGTGCTTGATAAACAATTGGTCATGGATGAAGAAGCTCTGACCAACATTAAGGATTATTATAAAAA
ATCACAACGAGTTATGAGTGAAAACAATAAAAAGCAAGCCCTTGTTTTAGATGGCTCCTCTATTTTGGTAAACGAGTTTG
GAATGGCCCCGGGGATGGCGTTGACTGAAGGTTCACATACATACATGCTTTTACCTGGTCCACCTAAAGAACTTCAACCA
ATGTTTTCAGTCCATGGCAGAGAATACCTGCTAGATAAGCTTGGAGCAAAAGAGCAGATCGTCTCCAAAGTCCTTCGCTT
TTTTGGTATTGGCGAATCACAATTGGAAACAGATATTGAAGATATTATTGACAAACAGACAAACCCGACCATTGCTCCGC
TAGCAGGGGACAATGAGGTTACACTAAGATTAACCGCTAAGCACCAATCAATGGACGAAGCAAATCGTTTAATAGATCAA
TGCGAAAAAGAAATCTTGGATAGAGTGGGAGAATTCTTTTTTGGATATGACGAAGATACCATTTACTCTGTACTCTTTGA
AAAAATTCAAAAGTCCCACTACACTCTGAGCAGTGCCGAGAGTCTTACCGGTGGTTTGTTCTCTGAGAAGATGACAAGCT
TCACCGGTGCTTCCGAAGTGATTGAAGGTGCCATAGTCAGCTATACTAATAGCGTGAAGGAAAATGTTCTTGGAGTTAAA
AAACAAACACTTGAAACCGATGGAGCAGTAAGTGAGCAGACTGCAAAGGAAATGGCAATCGGCGTGAAAAAAATGCTGCA
AACAGATATCGGTATCAGTTTTACAGGTGTTGCAGGTCCTGGAACGATGGATAATCAACCTGTTGGTACAGTGTTTATCG
GAATTGCACTTCCGAACGGAGAAACTACCGTTCATAAAATTCATCTAGCAGGGACGAGAGACGGCATAAGACATAGATCA
GCAAAATATGGCTGTCACTATCTACTGAAAGAATTGTTTAAGTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Competence-damaged protein (CinA)

(261-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.707

99.034

0.611
  cinA Streptococcus mitis SK321

45.107

100

0.457
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.107

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.107

100

0.457
  cinA Streptococcus pneumoniae R6

45.107

100

0.457
  cinA Streptococcus pneumoniae D39

44.869

100

0.454
  cinA Streptococcus mutans UA159

43.609

96.377

0.42
  cinA Streptococcus suis isolate S10

40.051

94.686

0.379