Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG279_RS09775 Genome accession   NZ_CP085249
Coordinates   1910745..1911989 (+) Length   414 a.a.
NCBI ID   WP_404433064.1    Uniprot ID   -
Organism   Sutcliffiella horikoshii strain ABH-543     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1905745..1916989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG279_RS09750 (LG279_09725) ymfI 1906925..1907641 (+) 717 WP_404433060.1 elongation factor P 5-aminopentanone reductase -
  LG279_RS09755 (LG279_09730) - 1907712..1907969 (+) 258 WP_010193278.1 DUF3243 domain-containing protein -
  LG279_RS09760 (LG279_09735) - 1908109..1908900 (+) 792 WP_404433436.1 DUF3388 domain-containing protein -
  LG279_RS09765 (LG279_09740) - 1908922..1909821 (+) 900 WP_404433062.1 helix-turn-helix domain-containing protein -
  LG279_RS09770 (LG279_09745) pgsA 1909969..1910553 (+) 585 WP_156317810.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG279_RS09775 (LG279_09750) cinA 1910745..1911989 (+) 1245 WP_404433064.1 competence/damage-inducible protein A Machinery gene
  LG279_RS09780 (LG279_09755) recA 1912303..1913343 (+) 1041 WP_404433066.1 recombinase RecA Machinery gene
  LG279_RS09785 (LG279_09760) rny 1913646..1915208 (+) 1563 WP_404433438.1 ribonuclease Y -
  LG279_RS09790 (LG279_09765) - 1915311..1916105 (+) 795 WP_404352000.1 TIGR00282 family metallophosphoesterase -
  LG279_RS09795 (LG279_09770) spoVS 1916253..1916513 (+) 261 WP_010193268.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45524.95 Da        Isoelectric Point: 5.3380

>NTDB_id=616350 LG279_RS09775 WP_404433064.1 1910745..1911989(+) (cinA) [Sutcliffiella horikoshii strain ABH-543]
MIRNAEIIAVGSELLLGQICNTNAQFLSKQLAELGINVFYHTVVGDNPSRLEEVITTAKQRSNLLIFTGGLGPTKDDLTK
ETIARVLDKQLVMDEEALSNIKDYYKKSQRVMSENNKKQALVLEGSSILVNEFGMAPGMALTEGSHTYMLLPGPPKELQP
MFSVHGREYLLDKLGVKEQIVSKVLRFFGIGESQLETDIEDIIDKQTNPTIAPLAGDNEVTLRLTAKHQSIDEANRLIDQ
CEKEVLDRVGEFFFGYDEDTIYSVLFEKIQKSHYTLSSAESLTGGLFSEKMTSFTGASEVIEGAIVSYTNSVKENVLGVK
KETLETHGAVSEQTAKEMAIGVKKLLQTDIGISFTGVAGPGTMDNQPVGTVYIGVALPNGETTVHKTHLAGTRDGIRHRS
AKYGCHYLLKELFK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=616350 LG279_RS09775 WP_404433064.1 1910745..1911989(+) (cinA) [Sutcliffiella horikoshii strain ABH-543]
ATGATCAGAAATGCAGAGATTATTGCCGTTGGCTCTGAATTACTGTTGGGACAAATCTGTAATACAAATGCCCAGTTTCT
TTCAAAGCAGCTTGCCGAGTTGGGAATCAACGTCTTTTATCATACGGTAGTCGGAGATAACCCTTCAAGACTAGAAGAAG
TAATAACAACAGCAAAACAACGCTCTAATCTTCTAATATTCACCGGGGGACTTGGTCCGACTAAAGATGATCTGACAAAG
GAAACGATTGCTAGGGTGCTTGATAAACAATTGGTTATGGATGAAGAAGCTCTGAGCAACATTAAGGATTATTATAAAAA
ATCACAACGAGTGATGAGTGAAAACAATAAAAAGCAGGCGCTTGTTTTAGAAGGCTCCTCTATTTTGGTAAATGAGTTTG
GAATGGCCCCGGGTATGGCGCTGACTGAAGGTTCTCATACATACATGCTATTACCTGGTCCGCCTAAAGAACTTCAGCCA
ATGTTTTCAGTCCATGGCAGAGAATACCTGCTAGATAAGCTTGGAGTCAAAGAGCAAATTGTATCCAAAGTGCTCCGCTT
TTTTGGTATTGGCGAATCACAATTGGAAACCGATATTGAAGATATCATTGACAAACAGACAAATCCGACCATTGCTCCAC
TAGCAGGTGACAACGAGGTTACACTAAGATTAACCGCTAAGCACCAATCAATTGACGAAGCAAATCGTTTAATAGATCAA
TGCGAAAAAGAAGTCTTGGATAGAGTGGGAGAATTCTTTTTTGGATATGACGAAGATACCATTTATTCTGTACTCTTTGA
AAAAATCCAAAAGTCCCACTACACTCTGAGCAGTGCCGAGAGTCTAACTGGCGGTTTATTCTCTGAGAAGATGACAAGCT
TCACCGGTGCTTCCGAAGTGATTGAAGGTGCCATAGTCAGCTATACTAATAGCGTGAAGGAAAATGTTCTGGGAGTTAAA
AAAGAAACACTTGAAACTCATGGAGCAGTAAGTGAGCAGACTGCAAAAGAAATGGCAATCGGCGTAAAAAAATTGCTGCA
AACAGATATCGGCATCAGTTTTACAGGAGTTGCAGGTCCGGGAACGATGGATAATCAACCTGTTGGTACAGTGTATATCG
GAGTTGCACTTCCGAACGGAGAAACTACCGTTCATAAAACTCATCTAGCAGGAACGAGAGACGGCATAAGACATAGATCA
GCAAAATATGGCTGTCACTATCTACTGAAAGAATTGTTTAAGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-411)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-167)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.707

99.034

0.611
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.454
  cinA Streptococcus pneumoniae Rx1

44.869

100

0.454
  cinA Streptococcus pneumoniae R6

44.869

100

0.454
  cinA Streptococcus mitis SK321

44.63

100

0.452
  cinA Streptococcus mitis NCTC 12261

44.63

100

0.452
  cinA Streptococcus pneumoniae D39

44.63

100

0.452
  cinA Streptococcus mutans UA159

43.5

96.618

0.42
  cinA Streptococcus suis isolate S10

40.682

92.029

0.374