Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SII_RS09000 Genome accession   NC_022237
Coordinates   1848381..1849649 (-) Length   422 a.a.
NCBI ID   WP_020999237.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843381..1854649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS08965 (SII_1765) - 1844099..1844404 (-) 306 WP_003075274.1 DUF1292 domain-containing protein -
  SII_RS08970 (SII_1766) ruvX 1844422..1844841 (-) 420 WP_003075276.1 Holliday junction resolvase RuvX -
  SII_RS08975 (SII_1767) - 1844841..1845107 (-) 267 WP_009569646.1 IreB family regulatory phosphoprotein -
  SII_RS08980 (SII_1768) - 1845413..1845970 (-) 558 WP_020999236.1 SP0191 family lipoprotein -
  SII_RS10390 - 1846487..1846621 (-) 135 WP_003077174.1 hypothetical protein -
  SII_RS08990 (SII_1769) spx 1846703..1847101 (-) 399 WP_003026638.1 transcriptional regulator Spx -
  SII_RS08995 (SII_1770) recA 1847187..1848332 (-) 1146 WP_003077215.1 recombinase RecA Machinery gene
  SII_RS09000 (SII_1771) cinA 1848381..1849649 (-) 1269 WP_020999237.1 competence/damage-inducible protein A Machinery gene
  SII_RS09005 - 1849785..1849958 (-) 174 Protein_1759 CPBP family intramembrane glutamate endopeptidase -
  SII_RS09010 (SII_1772) - 1849963..1850517 (-) 555 WP_003075291.1 DNA-3-methyladenine glycosylase I -
  SII_RS09015 (SII_1773) ruvA 1850527..1851117 (-) 591 WP_020999238.1 Holliday junction branch migration protein RuvA -
  SII_RS09020 (SII_1774) - 1851287..1851793 (+) 507 WP_020999239.1 helix-turn-helix domain-containing protein -
  SII_RS09025 (SII_1775) - 1851777..1852286 (+) 510 WP_041823294.1 RDD family protein -
  SII_RS09030 (SII_1776) mutL 1852432..1854378 (-) 1947 WP_020999241.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45681.24 Da        Isoelectric Point: 6.1719

>NTDB_id=61564 SII_RS09000 WP_020999237.1 1848381..1849649(-) (cinA) [Streptococcus intermedius C270]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGVDVYFQTVVGDNEDRLLSILEIARDRSNLVILTGGLGPTEDDLTKQT
LSKFLNRRLVFYQVAVEKLNRFFSSRPDYTRTPNNERQAQIVEGSTPLRNETGLAVGGVVEVSGVTYVVLPGPPSELKPM
VNNELVPLLATGQKLYSRVLRFFGIGESQLVTLLGNLIDTQTDPTIAPYAKTGEVTLRLSTKASSQKEADVKFAHLEKKI
LAVQTFEKQQLADLFYAYGDDNSLGQTAFELLKKAGKTVTAAESLTAGLFQATLANFSGASKVFGGGFITYGIEEKSQML
GIPLADLEMHGVVSAYTAEKMATQARKLTASDYAVSLTGVAGPDSLEGHPAGTVYIGLATADNVQSIQVNIAERSRTDVR
KIAVLHAFNLLRKTLLKNENML

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=61564 SII_RS09000 WP_020999237.1 1848381..1849649(-) (cinA) [Streptococcus intermedius C270]
ATGAAAGCAGAAATTATTGCTGTGGGTACTGAGATTTTGACTGGTCAGATTGTCAATACGAATGCTCAATTTTTATCTGA
AAAATTAGCGAGCTTGGGAGTAGATGTCTATTTCCAGACAGTGGTTGGAGATAATGAAGATCGTCTGTTATCCATTTTAG
AAATAGCTAGAGATCGTAGTAATTTAGTTATCTTGACAGGTGGTTTAGGTCCGACTGAAGACGACTTAACCAAGCAGACT
TTGTCAAAATTTTTGAATCGTAGGCTAGTCTTTTATCAAGTAGCTGTTGAAAAATTGAATCGTTTCTTCTCCAGCCGACC
GGACTATACTCGAACACCAAATAATGAGCGACAAGCTCAGATAGTAGAAGGGTCGACTCCTCTACGAAATGAAACCGGAC
TTGCAGTTGGTGGCGTTGTTGAAGTCAGTGGTGTGACTTATGTTGTTCTACCTGGCCCCCCTAGTGAACTAAAGCCTATG
GTAAACAATGAGTTGGTTCCGCTTTTAGCAACAGGCCAAAAATTGTATTCGAGAGTCTTGCGTTTCTTTGGTATTGGGGA
GAGTCAATTAGTTACCCTTTTAGGAAACTTGATTGATACTCAGACGGATCCGACCATTGCTCCTTATGCTAAAACGGGAG
AAGTGACGTTGCGATTGTCGACCAAGGCCAGCAGTCAAAAGGAAGCAGATGTTAAGTTTGCTCATCTGGAAAAGAAAATT
TTAGCAGTACAGACTTTTGAGAAACAACAATTAGCCGACCTTTTCTATGCTTATGGAGATGATAATTCTCTGGGACAGAC
AGCTTTTGAATTGTTGAAGAAAGCAGGCAAAACAGTCACAGCAGCTGAAAGTCTGACTGCGGGACTTTTTCAAGCGACTT
TAGCAAATTTTTCTGGAGCATCCAAGGTCTTTGGAGGTGGCTTTATTACTTATGGCATAGAGGAGAAGAGTCAAATGTTA
GGCATTCCATTGGCAGATTTAGAAATGCATGGGGTAGTCTCAGCTTATACAGCAGAGAAAATGGCTACGCAAGCTAGGAA
ATTGACTGCTAGTGACTATGCGGTGAGTTTGACTGGAGTAGCAGGTCCAGATAGTTTAGAAGGCCATCCAGCAGGAACTG
TTTATATTGGCTTGGCAACTGCAGATAACGTTCAGTCTATTCAGGTTAATATTGCGGAGCGCAGTCGGACGGATGTACGT
AAAATAGCTGTGTTACATGCTTTCAATTTGTTGCGAAAAACTTTATTAAAAAATGAGAATATGCTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-240)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.402

99.052

0.737
  cinA Streptococcus pneumoniae TIGR4

72.967

99.052

0.723
  cinA Streptococcus mitis NCTC 12261

72.967

99.052

0.723
  cinA Streptococcus pneumoniae Rx1

72.727

99.052

0.72
  cinA Streptococcus pneumoniae R6

72.727

99.052

0.72
  cinA Streptococcus pneumoniae D39

72.488

99.052

0.718
  cinA Streptococcus mutans UA159

70.686

100

0.709
  cinA Streptococcus suis isolate S10

53.365

98.578

0.526
  cinA Bacillus subtilis subsp. subtilis str. 168

45.694

99.052

0.453

Multiple sequence alignment