Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SII_RS03730 Genome accession   NC_022237
Coordinates   738701..739405 (+) Length   234 a.a.
NCBI ID   WP_020998590.1    Uniprot ID   -
Organism   Streptococcus intermedius C270     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 733701..744405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SII_RS03710 (SII_0727) - 734050..735267 (+) 1218 WP_318655700.1 multidrug efflux MFS transporter -
  SII_RS09710 (SII_0728) rpmG 735251..735400 (+) 150 WP_003034401.1 50S ribosomal protein L33 -
  SII_RS03715 (SII_0729) secG 735440..735673 (+) 234 WP_003024744.1 preprotein translocase subunit SecG -
  SII_RS03720 (SII_0730) rnr 735764..738103 (+) 2340 WP_020998588.1 ribonuclease R -
  SII_RS03725 (SII_0731) smpB 738066..738533 (+) 468 WP_020998589.1 SsrA-binding protein SmpB -
  SII_RS03730 (SII_0732) comEA/celA/cilE 738701..739405 (+) 705 WP_020998590.1 helix-hairpin-helix domain-containing protein Machinery gene
  SII_RS03735 (SII_0733) comEC/celB 739389..741623 (+) 2235 WP_020998591.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SII_RS03740 (SII_0734) - 741701..742411 (+) 711 WP_020998592.1 DUF805 domain-containing protein -
  SII_RS03745 (SII_0735) - 742852..743838 (+) 987 WP_020998593.1 Gfo/Idh/MocA family protein -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25387.81 Da        Isoelectric Point: 9.4255

>NTDB_id=61517 SII_RS03730 WP_020998590.1 738701..739405(+) (comEA/celA/cilE) [Streptococcus intermedius C270]
MLEVIITKIKEYKILVGLSLIGLIIAGFFLMTSKSARQSNVGDIAQEATNAKLERKETSTETKKKQQKEETKSQKNLASE
ELEFLTVDVKGAVKNPGIYQLKKTSRINDAIQKAGGLTTDADSKSINLAQKLTDEAVIYVATMGENVTNAASNNGQTLTT
DTDGTAAQKGNKVNLNKANLSDLQSISGIGQKRAQDILDYREANGKFNSVDELKNISGVGVKTLEKLKEYVTVD

Nucleotide


Download         Length: 705 bp        

>NTDB_id=61517 SII_RS03730 WP_020998590.1 738701..739405(+) (comEA/celA/cilE) [Streptococcus intermedius C270]
ATGTTAGAGGTAATCATCACAAAAATAAAAGAGTATAAAATTTTAGTTGGTTTAAGCCTGATTGGTTTGATCATAGCAGG
ATTTTTTCTGATGACTAGTAAATCTGCTAGACAATCTAATGTGGGAGATATTGCACAAGAGGCCACAAATGCAAAACTAG
AACGGAAAGAAACTTCAACTGAAACGAAGAAAAAACAACAGAAAGAAGAAACAAAATCTCAAAAGAATTTAGCGAGTGAA
GAATTGGAATTTTTAACTGTAGATGTTAAAGGTGCTGTTAAAAATCCAGGTATTTATCAATTAAAAAAAACAAGCCGAAT
AAATGATGCTATCCAAAAAGCGGGTGGACTAACGACAGACGCTGACAGCAAATCTATCAATTTGGCTCAAAAACTAACAG
ATGAGGCTGTGATTTATGTGGCAACTATGGGTGAAAATGTAACAAATGCTGCAAGTAATAATGGACAAACTTTAACGACA
GATACCGATGGAACTGCGGCACAAAAAGGGAATAAGGTCAATCTAAATAAGGCTAATTTGTCTGATTTACAGTCTATTTC
TGGTATTGGACAAAAGCGCGCCCAAGATATTTTAGATTATCGTGAGGCAAATGGAAAATTTAATTCTGTTGATGAGCTTA
AAAATATATCAGGAGTTGGTGTTAAAACATTAGAGAAATTGAAAGAATATGTCACAGTGGATTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(87-140)

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.073

99.573

0.509
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

51.073

99.573

0.509
  comEA/celA/cilE Streptococcus mitis SK321

51.073

99.573

0.509
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.644

99.573

0.504
  comEA/celA/cilE Streptococcus pneumoniae D39

50.644

99.573

0.504
  comEA/celA/cilE Streptococcus pneumoniae R6

50.644

99.573

0.504
  comEA Streptococcus thermophilus LMD-9

41.453

100

0.415
  comEA Lactococcus lactis subsp. cremoris KW2

36.481

99.573

0.363

Multiple sequence alignment