Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG951_RS08505 Genome accession   NZ_CP085037
Coordinates   1694161..1695411 (+) Length   416 a.a.
NCBI ID   WP_226805207.1    Uniprot ID   -
Organism   Bacillus pumilus strain BIM B-171     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1689161..1700411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG951_RS08480 (LG951_08480) ymfI 1690581..1691309 (+) 729 WP_106028933.1 elongation factor P 5-aminopentanone reductase -
  LG951_RS08485 (LG951_08485) - 1691383..1691640 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  LG951_RS08490 (LG951_08490) - 1691772..1692563 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  LG951_RS08495 (LG951_08495) - 1692587..1693486 (+) 900 WP_106032960.1 helix-turn-helix domain-containing protein -
  LG951_RS08500 (LG951_08500) pgsA 1693563..1694144 (+) 582 WP_044141864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG951_RS08505 (LG951_08505) cinA 1694161..1695411 (+) 1251 WP_226805207.1 competence/damage-inducible protein A Machinery gene
  LG951_RS08510 (LG951_08510) recA 1695589..1696626 (+) 1038 WP_050944976.1 recombinase RecA Machinery gene
  LG951_RS08515 (LG951_08515) - 1696768..1697943 (+) 1176 WP_226805208.1 serine hydrolase domain-containing protein -
  LG951_RS08520 (LG951_08520) rny 1698177..1699739 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45717.84 Da        Isoelectric Point: 4.9261

>NTDB_id=614817 LG951_RS08505 WP_226805207.1 1694161..1695411(+) (cinA) [Bacillus pumilus strain BIM B-171]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKPLICEKLDLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=614817 LG951_RS08505 WP_226805207.1 1694161..1695411(+) (cinA) [Bacillus pumilus strain BIM B-171]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTGGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATCGCGAGTACACTTGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACGTTTTATATGCTACTTCCTGGACCACCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGCCGCTGATATGTGAGAAACTGGATTTGAAGGAAAAAATCGTGTCTGTTGTTCT
CCGCTTTTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACGGAAGCGAAAATTTTAGCGCGTGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCCAAGGCCCTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCTGAATGGCTGA
CAGACCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCGGGCCCTGATACCCATGAGGGACAGCCTGTCGGAAAAGTGT
TTATCGGGCTATCTACGAAAGACCACACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGTATTCGAAAGCGC
GCTGTGAAATACGGACTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-171)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.976

99.76

0.738
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394