Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   LG319_RS06165 Genome accession   NZ_CP085027
Coordinates   1219248..1219568 (+) Length   106 a.a.
NCBI ID   WP_011275670.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SLM-175     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1214248..1224568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG319_RS06135 (LG319_06105) - 1215035..1215238 (+) 204 WP_037550632.1 YqgQ family protein -
  LG319_RS06140 (LG319_06110) - 1215235..1216221 (+) 987 WP_037550630.1 ROK family glucokinase -
  LG319_RS06145 (LG319_06115) - 1216221..1216544 (+) 324 WP_011275666.1 MTH1187 family thiamine-binding protein -
  LG319_RS06150 (LG319_06120) - 1216546..1217172 (+) 627 WP_037550628.1 MBL fold metallo-hydrolase -
  LG319_RS06155 (LG319_06125) comGA 1217224..1218198 (+) 975 WP_037550626.1 competence type IV pilus ATPase ComGA Machinery gene
  LG319_RS06160 (LG319_06130) comGB 1218170..1219234 (+) 1065 WP_053024492.1 competence type IV pilus assembly protein ComGB -
  LG319_RS06165 (LG319_06135) comGC 1219248..1219568 (+) 321 WP_011275670.1 competence type IV pilus major pilin ComGC Machinery gene
  LG319_RS06170 (LG319_06140) comGD 1219549..1220001 (+) 453 WP_226956186.1 competence type IV pilus minor pilin ComGD -
  LG319_RS06175 (LG319_06145) - 1219982..1220281 (+) 300 WP_053024491.1 hypothetical protein -
  LG319_RS06180 - 1220199..1220690 (+) 492 WP_037550614.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  LG319_RS06185 (LG319_06150) - 1220894..1221367 (+) 474 WP_053024489.1 shikimate kinase -
  LG319_RS06190 (LG319_06155) gcvT 1221556..1222647 (+) 1092 WP_053024487.1 glycine cleavage system aminomethyltransferase GcvT -
  LG319_RS06195 (LG319_06160) gcvPA 1222664..1224016 (+) 1353 WP_053024486.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11782.84 Da        Isoelectric Point: 8.5328

>NTDB_id=614726 LG319_RS06165 WP_011275670.1 1219248..1219568(+) (comGC) [Staphylococcus haemolyticus strain SLM-175]
MKNHFENLKKLKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHIQSTGCEAQVKMINSQIEAYTLKHNRTPSNINDLIND
GLIKEGQKQCRSGETITISNGEAIAN

Nucleotide


Download         Length: 321 bp        

>NTDB_id=614726 LG319_RS06165 WP_011275670.1 1219248..1219568(+) (comGC) [Staphylococcus haemolyticus strain SLM-175]
ATGAAAAATCACTTTGAAAATTTAAAAAAATTAAAAGCTTTTACTCTAATAGAAATGTTATTAGTATTACTAATTATCAG
CGTATTACTAATATTAATTATTCCAAACATTGCAAAACAAACAGCACATATCCAGTCCACAGGTTGTGAAGCTCAAGTCA
AAATGATAAATAGTCAAATAGAAGCATATACATTAAAACATAATCGTACACCTTCTAATATAAATGATCTTATCAATGAT
GGCCTTATAAAAGAAGGACAAAAACAATGCAGATCGGGAGAAACTATTACAATATCTAATGGTGAGGCTATTGCGAACTA
G

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(10-33)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus N315

83.333

96.226

0.802
  comGC Staphylococcus aureus MW2

83.333

96.226

0.802
  comYC Streptococcus gordonii str. Challis substr. CH1

45.192

98.113

0.443
  comGC/cglC Streptococcus mitis SK321

45.745

88.679

0.406
  comGC/cglC Streptococcus pneumoniae TIGR4

44.681

88.679

0.396
  comGC/cglC Streptococcus mitis NCTC 12261

49.383

76.415

0.377
  comGC/cglC Streptococcus pneumoniae R6

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae D39

48.148

76.415

0.368
  comGC/cglC Streptococcus pneumoniae Rx1

48.148

76.415

0.368