Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LG282_RS10640 Genome accession   NZ_CP085020
Coordinates   2019943..2021175 (+) Length   410 a.a.
NCBI ID   WP_251161481.1    Uniprot ID   -
Organism   Cytobacillus kochii strain SLM-180     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2014943..2026175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG282_RS10615 (LG282_10545) ymfI 2016205..2016927 (+) 723 WP_251161479.1 elongation factor P 5-aminopentanone reductase -
  LG282_RS10620 (LG282_10550) - 2017039..2017284 (+) 246 WP_095369466.1 DUF3243 domain-containing protein -
  LG282_RS10625 (LG282_10555) - 2017488..2018285 (+) 798 WP_095369465.1 DUF3388 domain-containing protein -
  LG282_RS10630 (LG282_10560) - 2018298..2019188 (+) 891 WP_251161480.1 RodZ domain-containing protein -
  LG282_RS10635 (LG282_10565) pgsA 2019348..2019926 (+) 579 WP_191812097.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LG282_RS10640 (LG282_10570) cinA 2019943..2021175 (+) 1233 WP_251161481.1 competence/damage-inducible protein A Machinery gene
  LG282_RS10645 (LG282_10575) recA 2021550..2022590 (+) 1041 WP_095369461.1 recombinase RecA Machinery gene
  LG282_RS10650 (LG282_10580) rny 2023052..2024611 (+) 1560 WP_095369460.1 ribonuclease Y -
  LG282_RS10655 (LG282_10585) - 2024735..2025532 (+) 798 WP_095369459.1 TIGR00282 family metallophosphoesterase -
  LG282_RS10660 (LG282_10590) spoVS 2025684..2025944 (+) 261 WP_095369458.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44778.21 Da        Isoelectric Point: 4.9412

>NTDB_id=614613 LG282_RS10640 WP_251161481.1 2019943..2021175(+) (cinA) [Cytobacillus kochii strain SLM-180]
MNAEIIAVGSELLLGQINNTNAKFLSQQLADLGVNVFYHTVVGDNAGRLESAIKIAENRAELIIFTGGLGPTKDDLTKET
IAKHLQTNLVMDDIALASIEEYFKRTNRPMTENNRKQALVLSGAKVLPNDYGMAPGMFYQKENKQYMLLPGPPKEMEPMF
LKYGFSAIKSQAVEEAVISSRVLRFFGIGEAMLEAEIEDILDNQTNPTIAPLAGDHEVTLRLTAKHHNLDTAITLLEEKE
KEIMAVVGEYFYGYDDTSLFKELSKRMQEKKLTLSAAESLTGGMFQETFTSIPGAGGLINGGVVCYTNEVKAKVLNVKQE
TIKNEGVVSATCAKELAENVAKLMESDIGVSFTGVAGPDELEGNPVGTVYIGIYHDGEARAEKLNLGGSRTSIRKRSSLY
GAYFLLKSLA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=614613 LG282_RS10640 WP_251161481.1 2019943..2021175(+) (cinA) [Cytobacillus kochii strain SLM-180]
ATGAATGCTGAAATTATTGCCGTTGGCTCTGAGTTGTTATTAGGACAAATTAACAATACGAACGCCAAATTTTTATCACA
GCAGTTAGCTGACCTTGGTGTGAATGTTTTTTATCATACGGTCGTCGGAGACAATGCGGGGCGGTTAGAGTCTGCTATAA
AAATTGCTGAAAATAGAGCGGAACTCATTATTTTCACTGGTGGGCTTGGTCCGACAAAAGACGATTTAACAAAAGAAACC
ATTGCTAAGCATTTGCAAACAAATCTCGTAATGGATGATATAGCACTGGCGTCTATTGAAGAATATTTTAAACGGACGAA
TCGACCGATGACTGAAAATAATCGTAAGCAAGCCTTAGTGCTTTCTGGTGCGAAAGTACTTCCTAATGATTACGGTATGG
CACCTGGTATGTTTTATCAGAAGGAAAATAAGCAATATATGCTTTTACCTGGGCCACCAAAAGAAATGGAACCGATGTTT
TTGAAATACGGATTTTCCGCAATTAAATCACAAGCAGTAGAAGAAGCAGTTATCTCGTCGCGTGTCCTTAGATTCTTTGG
CATTGGTGAAGCAATGCTAGAGGCGGAAATAGAAGATATACTTGATAACCAAACAAACCCGACGATTGCACCGTTAGCGG
GAGATCATGAAGTTACATTGAGGTTGACAGCCAAACATCATAATCTTGATACGGCTATAACACTTTTGGAAGAGAAAGAG
AAAGAAATTATGGCAGTAGTAGGAGAGTATTTTTACGGTTATGATGATACGTCGCTATTTAAAGAGCTCTCAAAAAGAAT
GCAGGAAAAGAAATTAACCCTGTCTGCTGCGGAAAGTTTAACTGGGGGCATGTTTCAAGAAACATTTACATCGATTCCTG
GAGCTGGTGGGCTCATAAATGGTGGCGTCGTTTGTTATACAAATGAAGTAAAAGCTAAAGTACTAAATGTAAAGCAAGAG
ACAATTAAAAATGAAGGTGTTGTCAGTGCTACATGTGCAAAGGAACTTGCGGAAAATGTCGCCAAATTAATGGAAAGTGA
CATTGGTGTAAGCTTTACGGGTGTTGCCGGACCTGATGAATTAGAAGGCAACCCAGTCGGTACCGTTTATATAGGGATTT
ATCACGATGGTGAAGCAAGGGCTGAGAAGCTCAACCTTGGTGGGTCTCGCACATCAATCAGAAAGAGGTCATCTCTTTAT
GGCGCCTATTTTCTATTGAAATCCTTGGCGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.442

99.268

0.6
  cinA Streptococcus mutans UA159

43.237

100

0.437
  cinA Streptococcus mitis SK321

42.482

100

0.434
  cinA Streptococcus pneumoniae TIGR4

42.482

100

0.434
  cinA Streptococcus mitis NCTC 12261

42.243

100

0.432
  cinA Streptococcus pneumoniae Rx1

42.243

100

0.432
  cinA Streptococcus pneumoniae R6

42.243

100

0.432
  cinA Streptococcus pneumoniae D39

42.005

100

0.429
  cinA Streptococcus suis isolate S10

36.232

100

0.366