Detailed information NTG0612646

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: LG401_RS15955
• Genome accession: NZ_CP084711
• Coordinates: 3126917..3127603 (-)
• Length: 228 a.a.
• NCBI ID: WP_189288297.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain AR03
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3121917..3132603

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LG401_RS15920 (LG401_15920)	fliW	3122050..3122484 (-)	435	WP_034660142.1	flagellar assembly protein FliW	-
LG401_RS15925 (LG401_15925)	-	3122513..3123091 (-)	579	WP_034660143.1	DUF6470 family protein	-
LG401_RS15930 (LG401_15930)	flgL	3123140..3124051 (-)	912	WP_066031682.1	flagellar hook-associated protein FlgL	-
LG401_RS15935 (LG401_15935)	flgK	3124061..3125581 (-)	1521	WP_060597394.1	flagellar hook-associated protein FlgK	-
LG401_RS15940 (LG401_15940)	-	3125597..3126079 (-)	483	WP_034660146.1	flagellar protein FlgN	-
LG401_RS15945 (LG401_15945)	flgM	3126098..3126361 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
LG401_RS15950 (LG401_15950)	-	3126441..3126860 (-)	420	WP_060597396.1	TIGR03826 family flagellar region protein	-
LG401_RS15955 (LG401_15955)	comFC	3126917..3127603 (-)	687	WP_189288297.1	ComF family protein	Machinery gene
LG401_RS15960 (LG401_15960)	-	3127600..3127893 (-)	294	WP_060597398.1	late competence development ComFB family protein	-
LG401_RS15965 (LG401_15965)	comFA	3127960..3129339 (-)	1380	WP_142393300.1	DEAD/DEAH box helicase	Machinery gene
LG401_RS15970 (LG401_15970)	-	3129460..3130302 (-)	843	WP_095285726.1	DegV family protein	-
LG401_RS15975 (LG401_15975)	degU	3130520..3131209 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
LG401_RS15980 (LG401_15980)	degS	3131274..3132449 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26048.47 Da
• Isoelectric Point: 9.9327

>NTDB_id=612646 LG401_RS15955 WP_189288297.1 3126917..3127603(-) (comFC) [Bacillus pumilus strain AR03]
MICLICEGHFVAAFTWKSLLLLNDDHLCIACKHHLEKIQRPICPACGRAQSNDQLCQDCSRWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAVFKRSFSIKEPVLIPIPLSKERLKERGFNQSVILASLIGQPILQPLVKIH
QSKQSKKKKNERLDQKRMFQIKQTDAIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=612646 LG401_RS15955 WP_189288297.1 3126917..3127603(-) (comFC) [Bacillus pumilus strain AR03]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTGCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCATCT
ATGTATAGCATGTAAGCATCACCTAGAAAAAATTCAACGCCCGATTTGTCCAGCTTGTGGGAGAGCACAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTTTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCAGTATTTAAGCGCTCCTTTTCAATTAAAGAACCTGTGCTGATCCCGATTCCTTTAAGTAAAGAAAGGCTAA
AGGAAAGAGGGTTTAATCAGTCAGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTGCAGCCGCTTGTGAAAATACAT
CAAAGCAAGCAGTCTAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAAGAATGTTTCAAATCAAGCAGACAGATGCGAT
CGTTCAAAGGGATGTTATCTTAATTGACGACATCTATACAACGGGGGCCACCATTTATGATGCGGCAAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCTTTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (156-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae Rx1	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae D39	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae R6	39.301	100	0.395
comFC/cflB	Streptococcus pneumoniae TIGR4	39.301	100	0.395