Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   LG401_RS15975 Genome accession   NZ_CP084711
Coordinates   3130520..3131209 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain AR03     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3125520..3136209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS15940 (LG401_15940) - 3125597..3126079 (-) 483 WP_034660146.1 flagellar protein FlgN -
  LG401_RS15945 (LG401_15945) flgM 3126098..3126361 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  LG401_RS15950 (LG401_15950) - 3126441..3126860 (-) 420 WP_060597396.1 TIGR03826 family flagellar region protein -
  LG401_RS15955 (LG401_15955) comFC 3126917..3127603 (-) 687 WP_189288297.1 ComF family protein Machinery gene
  LG401_RS15960 (LG401_15960) - 3127600..3127893 (-) 294 WP_060597398.1 late competence development ComFB family protein -
  LG401_RS15965 (LG401_15965) comFA 3127960..3129339 (-) 1380 WP_142393300.1 DEAD/DEAH box helicase Machinery gene
  LG401_RS15970 (LG401_15970) - 3129460..3130302 (-) 843 WP_095285726.1 DegV family protein -
  LG401_RS15975 (LG401_15975) degU 3130520..3131209 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  LG401_RS15980 (LG401_15980) degS 3131274..3132449 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  LG401_RS15985 (LG401_15985) - 3132671..3133339 (+) 669 WP_216454630.1 YigZ family protein -
  LG401_RS15990 (LG401_15990) - 3133324..3134415 (+) 1092 WP_216454629.1 LCP family protein -
  LG401_RS15995 (LG401_15995) - 3134451..3135518 (-) 1068 WP_034660156.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=612648 LG401_RS15975 WP_008348273.1 3130520..3131209(-) (degU) [Bacillus pumilus strain AR03]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=612648 LG401_RS15975 WP_008348273.1 3130520..3131209(-) (degU) [Bacillus pumilus strain AR03]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGGGCAAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996