Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LG401_RS15965 Genome accession   NZ_CP084711
Coordinates   3127960..3129339 (-) Length   459 a.a.
NCBI ID   WP_142393300.1    Uniprot ID   -
Organism   Bacillus pumilus strain AR03     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3122960..3134339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG401_RS15930 (LG401_15930) flgL 3123140..3124051 (-) 912 WP_066031682.1 flagellar hook-associated protein FlgL -
  LG401_RS15935 (LG401_15935) flgK 3124061..3125581 (-) 1521 WP_060597394.1 flagellar hook-associated protein FlgK -
  LG401_RS15940 (LG401_15940) - 3125597..3126079 (-) 483 WP_034660146.1 flagellar protein FlgN -
  LG401_RS15945 (LG401_15945) flgM 3126098..3126361 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  LG401_RS15950 (LG401_15950) - 3126441..3126860 (-) 420 WP_060597396.1 TIGR03826 family flagellar region protein -
  LG401_RS15955 (LG401_15955) comFC 3126917..3127603 (-) 687 WP_189288297.1 ComF family protein Machinery gene
  LG401_RS15960 (LG401_15960) - 3127600..3127893 (-) 294 WP_060597398.1 late competence development ComFB family protein -
  LG401_RS15965 (LG401_15965) comFA 3127960..3129339 (-) 1380 WP_142393300.1 DEAD/DEAH box helicase Machinery gene
  LG401_RS15970 (LG401_15970) - 3129460..3130302 (-) 843 WP_095285726.1 DegV family protein -
  LG401_RS15975 (LG401_15975) degU 3130520..3131209 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  LG401_RS15980 (LG401_15980) degS 3131274..3132449 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  LG401_RS15985 (LG401_15985) - 3132671..3133339 (+) 669 WP_216454630.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52604.81 Da        Isoelectric Point: 10.2540

>NTDB_id=612647 LG401_RS15965 WP_142393300.1 3127960..3129339(-) (comFA) [Bacillus pumilus strain AR03]
MNMDKAMELRQQLQSRHLLTAETRCSQSDLDWLVEKGLVIRTPAIERKANGLTCCRCGVSKKRYFAHTPCDMCQKDCVYC
RSCIMMGKTTECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIEAIKNKFDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGMKIAVLYGGSPQRFQIAPLVIATTHQLMRYKLAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMKRDVSRGQLEAIKIPLRFHQQPLPVPSFQWIGHWKKKLKKNQLPPKVMNWMQK
HITKKRRILLFVPSISTMKKITKVLREHRLNVEGVSADDPDRKQKVQHFRDYKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVIFFHFGLTRSMKQAKKHIVKMNDTAAKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=612647 LG401_RS15965 WP_142393300.1 3127960..3129339(-) (comFA) [Bacillus pumilus strain AR03]
TTGAACATGGACAAAGCAATGGAACTAAGGCAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTCACA
GTCCGATTTGGATTGGCTGGTGGAGAAAGGGTTAGTCATCCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTTACTT
GCTGTAGATGTGGTGTATCAAAAAAGCGGTACTTTGCCCACACTCCGTGTGACATGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACAACGGAATGTGGCTTTCTTTATGAATGGACGGGTCCACAAATGGAAGAAACATG
TCATACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGGGCGTCAGAAAAATTGATCGAAGCGATAAAAA
ACAAATTTGATCTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATTGAATATGCCTTA
CATCAAGGAATGAGCGTCTGCATTGCGACACCTAGAACAGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TCAAGGAATGAAAATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTGATCGCCACAACTC
ATCAGTTGATGAGATACAAACTTGCATTTGATGTGCTTATTATAGATGAAGTCGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCCTCTAAGAAAAT
GAAAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTGCGCTTTCACCAACAACCGTTACCTGTCCCGT
CCTTTCAATGGATTGGACATTGGAAGAAGAAATTAAAAAAGAACCAGCTCCCACCTAAAGTAATGAATTGGATGCAGAAA
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCGACCATGAAGAAGATAACGAAGGTCCTTAGAGA
ACACCGCTTAAATGTGGAGGGGGTGTCTGCTGATGATCCAGACAGGAAACAAAAGGTCCAGCACTTCAGAGATTATAAAT
ACGATGTACTAGTTACAACCACCATTCTAGAAAGAGGCGTTACCATTCCAAATGTTCAAGTGGGGGTACTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
AATCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACAGCTGCAA
AAGAGTTTTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

54.084

98.693

0.534