Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LDO17_RS08740 Genome accession   NZ_CP084539
Coordinates   1809320..1810552 (+) Length   410 a.a.
NCBI ID   WP_048684939.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Ant232     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1804320..1815552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDO17_RS08715 - 1805532..1806257 (+) 726 WP_048684725.1 SDR family oxidoreductase -
  LDO17_RS08720 - 1806339..1806596 (+) 258 WP_034313532.1 DUF3243 domain-containing protein -
  LDO17_RS08725 - 1806839..1807630 (+) 792 WP_034313530.1 DUF3388 domain-containing protein -
  LDO17_RS08730 - 1807639..1808547 (+) 909 WP_309247765.1 helix-turn-helix domain-containing protein -
  LDO17_RS08735 pgsA 1808713..1809297 (+) 585 WP_048684722.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LDO17_RS08740 cinA 1809320..1810552 (+) 1233 WP_048684939.1 competence/damage-inducible protein A Machinery gene
  LDO17_RS08745 recA 1810902..1811948 (+) 1047 WP_034313522.1 recombinase RecA Machinery gene
  LDO17_RS08750 rny 1812302..1813861 (+) 1560 WP_034313519.1 ribonuclease Y -
  LDO17_RS08755 - 1814014..1814811 (+) 798 WP_048684720.1 TIGR00282 family metallophosphoesterase -
  LDO17_RS08760 spoVS 1814985..1815245 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44997.32 Da        Isoelectric Point: 5.0424

>NTDB_id=611762 LDO17_RS08740 WP_048684939.1 1809320..1810552(+) (cinA) [Peribacillus frigoritolerans strain Ant232]
MDAEIIAVGSELLLGQINNTNGRFLSQQFAEMGINVFYHTVVGDNDRRLQQAIEIAESRANLIVFTGGLGPTKDDLTKET
IARHIGKKLVFNDEALQSIEAYFQKRERPMTENNKKQALVLEGSEVLANDHGMAPGMVLSKSGITYMLLPGPPSEMEPMF
LSYGYEKIMNKLEKHERIDSKVLRFYGIGEAELETVIEDLLVNQTNPTIAPLAAEGEVTLRITAKGPSKEKCEELILETE
KEILSRVGKFHYGSDNTSLIKELVKELTVRKLSIAAAESLTGGMFQEQLTTIPGAGKVFKGGMVCYTNDAKTNVLGVSDD
TISEYGVVSGECAMEMASNVRSKLDADVGISFTGVAGPDEQEGKPVGTVFIGISYRDGNTHFKELNLSGSRAQNRIRSVK
YGCHYLLRDL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=611762 LDO17_RS08740 WP_048684939.1 1809320..1810552(+) (cinA) [Peribacillus frigoritolerans strain Ant232]
ATGGATGCAGAAATCATTGCAGTGGGTTCAGAGCTTCTTTTAGGTCAAATCAATAACACTAATGGAAGATTCTTATCGCA
GCAGTTTGCGGAAATGGGAATCAACGTTTTTTACCATACTGTGGTCGGAGATAACGACCGCCGATTACAACAAGCTATAG
AAATCGCTGAATCGAGGGCGAACTTGATTGTTTTTACCGGTGGGCTTGGTCCTACCAAAGATGACTTAACGAAAGAAACG
ATTGCTCGCCATATCGGGAAAAAGCTCGTTTTTAATGATGAAGCTTTGCAATCCATTGAAGCTTACTTCCAAAAACGGGA
ACGGCCGATGACGGAAAACAACAAAAAGCAGGCCCTTGTCTTGGAAGGCAGTGAAGTGTTGGCAAACGATCATGGCATGG
CCCCGGGAATGGTTTTGTCCAAATCTGGGATTACATATATGCTCCTGCCTGGACCACCAAGTGAAATGGAGCCGATGTTT
TTAAGTTATGGTTATGAAAAAATCATGAATAAATTGGAAAAGCATGAACGGATCGATTCCAAGGTTCTTCGGTTCTACGG
TATAGGTGAAGCCGAACTGGAAACGGTGATTGAAGATCTCCTTGTCAATCAAACGAATCCGACAATCGCTCCGCTTGCAG
CCGAAGGGGAAGTGACGTTAAGGATCACCGCCAAAGGCCCTTCTAAAGAAAAATGCGAAGAACTTATTTTAGAAACGGAA
AAAGAAATTCTTAGCCGGGTCGGAAAGTTCCATTATGGAAGTGATAATACTTCTCTAATAAAGGAACTTGTAAAAGAATT
AACGGTCCGCAAGCTTTCAATCGCGGCAGCTGAAAGCTTGACCGGGGGGATGTTCCAAGAACAGCTGACAACCATCCCGG
GCGCCGGTAAAGTCTTTAAGGGCGGAATGGTCTGCTATACGAATGATGCGAAGACCAATGTCCTCGGCGTCAGTGATGAT
ACCATATCTGAGTATGGGGTGGTCAGCGGTGAGTGTGCAATGGAAATGGCCTCTAATGTCCGGAGTAAGCTCGATGCGGA
TGTAGGCATAAGCTTTACGGGTGTTGCGGGGCCGGACGAACAAGAAGGCAAGCCTGTAGGTACAGTATTTATTGGCATTT
CCTATCGGGATGGAAACACTCACTTCAAGGAGTTGAATCTTTCCGGAAGCAGGGCGCAAAACCGTATTCGGAGTGTGAAG
TACGGCTGTCATTACCTATTAAGGGATTTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.512

0.585
  cinA Streptococcus pneumoniae TIGR4

44.762

100

0.459
  cinA Streptococcus mitis SK321

44.524

100

0.456
  cinA Streptococcus pneumoniae Rx1

44.286

100

0.454
  cinA Streptococcus pneumoniae R6

44.286

100

0.454
  cinA Streptococcus pneumoniae D39

44.048

100

0.451
  cinA Streptococcus mitis NCTC 12261

44.048

100

0.451
  cinA Streptococcus mutans UA159

43.317

98.537

0.427
  cinA Streptococcus suis isolate S10

39.098

97.317

0.38