Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K9N64_RS05515 Genome accession   NZ_CP084248
Coordinates   667388..668629 (+) Length   413 a.a.
NCBI ID   WP_147606756.1    Uniprot ID   -
Organism   Enterococcus lactis strain DH9003     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 662388..673629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N64_RS05495 (K9N64_05485) yfmF 662593..663861 (+) 1269 WP_002310447.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  K9N64_RS05500 (K9N64_05490) yfmH 663854..665140 (+) 1287 WP_123830620.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  K9N64_RS05505 (K9N64_05495) - 665508..666431 (+) 924 WP_002310444.1 RodZ domain-containing protein -
  K9N64_RS05510 (K9N64_05500) pgsA 666639..667217 (+) 579 WP_002310442.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  K9N64_RS05515 (K9N64_05505) cinA 667388..668629 (+) 1242 WP_147606756.1 competence/damage-inducible protein A Machinery gene
  K9N64_RS05520 (K9N64_05510) recA 668738..669784 (+) 1047 WP_002310440.1 recombinase RecA Machinery gene
  K9N64_RS05525 (K9N64_05515) rny 670203..671759 (+) 1557 WP_002287336.1 ribonuclease Y -
  K9N64_RS05530 (K9N64_05520) proC 671838..672644 (-) 807 WP_147606755.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45494.91 Da        Isoelectric Point: 4.7550

>NTDB_id=610285 K9N64_RS05515 WP_147606756.1 667388..668629(+) (cinA) [Enterococcus lactis strain DH9003]
MKAEIIAVGTELLLGQVVNTNATFLSEQLADLGIEVYYQTVVGDNQQRLEELIALSETRSELILLCGGLGPTEDDLTKEA
TAAHLGKSLIQNTEGYKKLLAYFETTHRKMTKNNLQQSQIIEGGVPLPNRTGLALGTFYQTDTHAYILLPGPPNELKPMF
VEQVRPLLEERFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDVQAGNQALLALE
EKIQERVGEYFYGYGDDNSLAKVVVELLKENKQTVTAAESLTAGAFQAALGDIAGVSEVFPGGFVTYSLQTKAGFLEIDP
ELLAEYGTVSKECVEQMAIQAREIARTDYSVAFTGVAGPDTLEGHPAGTVWIAISSKDGVVSEKYHFARDRAAIRYNTVM
QGFDLLRKQLLRK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=610285 K9N64_RS05515 WP_147606756.1 667388..668629(+) (cinA) [Enterococcus lactis strain DH9003]
ATGAAAGCAGAAATAATAGCTGTCGGAACAGAACTTTTACTAGGACAAGTCGTGAATACGAATGCCACTTTCTTGTCAGA
ACAGCTAGCTGATCTAGGTATCGAAGTTTATTATCAGACCGTCGTAGGAGATAATCAGCAGCGTTTAGAAGAGTTGATTG
CTCTATCTGAAACAAGAAGTGAACTCATACTCTTATGTGGCGGATTAGGGCCGACAGAAGATGATCTGACAAAAGAAGCA
ACTGCGGCTCACCTCGGTAAGTCTCTCATACAAAATACGGAAGGATACAAAAAATTATTGGCATATTTTGAAACAACCCA
TCGAAAAATGACCAAAAACAATCTGCAACAGTCTCAAATCATCGAAGGTGGGGTTCCTCTACCAAATCGTACAGGGCTTG
CTTTAGGGACTTTTTATCAAACAGATACACATGCATATATCCTTCTTCCCGGTCCGCCTAATGAGTTGAAACCAATGTTT
GTGGAACAAGTACGTCCTTTACTAGAGGAACGTTTTCCTTCTGAAGAAAAACTGATTTCTAAAGTTTTGCGCTTTTATGG
GATTGGTGAATCGCGACTGGTCACTGAACTAAAAGATCTAATCGAGACACAGATTAATCCAACGATCGCTCCTTATGCCA
AACCAAATGAAGTGACATTGCGTCTAACAGTAAAAACAAAGGATGTTCAGGCAGGAAATCAAGCTCTTTTAGCATTGGAA
GAAAAGATTCAAGAACGAGTAGGAGAATATTTTTATGGATATGGCGATGATAATTCGTTAGCAAAAGTCGTAGTGGAACT
GCTGAAAGAAAACAAGCAGACTGTAACAGCGGCGGAAAGCTTGACAGCCGGTGCCTTCCAAGCCGCATTGGGCGATATTG
CTGGTGTATCTGAAGTATTTCCAGGCGGCTTTGTTACCTACTCGCTCCAAACAAAAGCTGGTTTTCTGGAGATTGATCCG
GAGCTATTAGCAGAATATGGAACAGTCAGCAAAGAATGTGTGGAGCAGATGGCCATTCAAGCACGTGAGATAGCAAGAAC
AGATTACAGTGTAGCTTTCACCGGAGTGGCTGGACCGGACACATTAGAAGGTCACCCTGCAGGAACAGTATGGATCGCTA
TTTCATCTAAAGATGGCGTGGTTTCAGAAAAATATCATTTTGCCAGAGACCGTGCGGCTATCAGATATAATACGGTTATG
CAAGGATTTGATCTTTTGAGAAAACAGCTTTTAAGAAAATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.19

100

0.521
  cinA Streptococcus pneumoniae TIGR4

50.952

100

0.518
  cinA Streptococcus pneumoniae R6

50.714

100

0.516
  cinA Streptococcus mitis NCTC 12261

50.714

100

0.516
  cinA Streptococcus pneumoniae Rx1

50.714

100

0.516
  cinA Streptococcus pneumoniae D39

50.714

100

0.516
  cinA Streptococcus mutans UA159

51.084

100

0.513
  cinA Bacillus subtilis subsp. subtilis str. 168

47.573

99.758

0.475
  cinA Streptococcus suis isolate S10

41.304

100

0.414