Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | LCH17_RS07315 | Genome accession | NZ_CP083944 |
| Coordinates | 1661497..1661817 (+) | Length | 106 a.a. |
| NCBI ID | WP_044800705.1 | Uniprot ID | - |
| Organism | Aeromonas hydrophila strain CSUSB2 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1656497..1666817
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LCH17_RS07290 (LCH17_07290) | - | 1657134..1657769 (-) | 636 | WP_044800701.1 | hemolysin III family protein | - |
| LCH17_RS07295 (LCH17_07295) | - | 1657994..1659499 (+) | 1506 | WP_073351541.1 | aminotransferase class V-fold PLP-dependent enzyme | - |
| LCH17_RS07300 (LCH17_07300) | - | 1659604..1660155 (+) | 552 | WP_024946223.1 | septation protein A | - |
| LCH17_RS07305 (LCH17_07305) | - | 1660181..1660477 (+) | 297 | WP_005309589.1 | YciI family protein | - |
| LCH17_RS07310 (LCH17_07310) | cysQ | 1660558..1661328 (-) | 771 | WP_162275770.1 | 3'(2'),5'-bisphosphate nucleotidase CysQ | - |
| LCH17_RS07315 (LCH17_07315) | comEA | 1661497..1661817 (+) | 321 | WP_044800705.1 | ComEA family DNA-binding protein | Machinery gene |
| LCH17_RS07320 (LCH17_07320) | galU | 1661912..1662823 (+) | 912 | WP_017410998.1 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| LCH17_RS07325 (LCH17_07325) | - | 1663037..1664434 (+) | 1398 | WP_224481069.1 | peptide MFS transporter | - |
| LCH17_RS07330 (LCH17_07330) | - | 1664508..1665479 (-) | 972 | WP_073351545.1 | response regulator | - |
| LCH17_RS07335 (LCH17_07335) | - | 1665820..1666497 (+) | 678 | WP_073351546.1 | DnaT-like ssDNA-binding domain-containing protein | - |
Sequence
Protein
Download Length: 106 a.a. Molecular weight: 11238.11 Da Isoelectric Point: 9.5773
>NTDB_id=608720 LCH17_RS07315 WP_044800705.1 1661497..1661817(+) (comEA) [Aeromonas hydrophila strain CSUSB2]
MNYKTLTATLLLSCLPLLSQPLLAADKPVAKPATTVTAAKESGKVNLNTANINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
MNYKTLTATLLLSCLPLLSQPLLAADKPVAKPATTVTAAKESGKVNLNTANINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK
Nucleotide
Download Length: 321 bp
>NTDB_id=608720 LCH17_RS07315 WP_044800705.1 1661497..1661817(+) (comEA) [Aeromonas hydrophila strain CSUSB2]
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGTTGCCAAGCCGGCAACTACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTGAACACCGCCAATATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAAAAGGCCCAGGCCATCGTTGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGCATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A
ATGAACTACAAGACCCTGACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAGCCTCTGCTGGCCGCCGACAA
GCCTGTTGCCAAGCCGGCAACTACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTGAACACCGCCAATATCAATG
AGTTGACTGCGCTCAAGGGCATTGGCGAGAAAAAGGCCCAGGCCATCGTTGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGCATCGGGCCGGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio cholerae C6706 |
52.727 |
100 |
0.547 |
| comEA | Vibrio cholerae strain A1552 |
52.727 |
100 |
0.547 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
43.243 |
100 |
0.453 |
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
44.898 |
92.453 |
0.415 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
62.319 |
65.094 |
0.406 |
| comEA | Vibrio campbellii strain DS40M4 |
41 |
94.34 |
0.387 |
| comEA | Legionella pneumophila str. Paris |
38.235 |
96.226 |
0.368 |
| comEA | Legionella pneumophila strain ERS1305867 |
38.235 |
96.226 |
0.368 |
| comEA | Acinetobacter baylyi ADP1 |
45.882 |
80.189 |
0.368 |