Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LCH16_RS08995 Genome accession   NZ_CP083943
Coordinates   1791197..1792447 (+) Length   416 a.a.
NCBI ID   WP_060675475.1    Uniprot ID   -
Organism   Bacillus velezensis strain CSUSB3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1786197..1797447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LCH16_RS08965 (LCH16_08965) yfmH 1786282..1787568 (+) 1287 WP_044053215.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LCH16_RS08970 (LCH16_08970) ymfI 1787627..1788355 (+) 729 WP_025851235.1 elongation factor P 5-aminopentanone reductase -
  LCH16_RS08975 (LCH16_08975) - 1788431..1788688 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  LCH16_RS08980 (LCH16_08980) - 1788816..1789607 (+) 792 WP_007409819.1 YmfK family protein -
  LCH16_RS08985 (LCH16_08985) - 1789626..1790525 (+) 900 WP_224463212.1 RodZ domain-containing protein -
  LCH16_RS08990 (LCH16_08990) pgsA 1790598..1791179 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LCH16_RS08995 (LCH16_08995) cinA 1791197..1792447 (+) 1251 WP_060675475.1 competence/damage-inducible protein A Machinery gene
  LCH16_RS09000 (LCH16_09000) recA 1792618..1793661 (+) 1044 WP_060675476.1 recombinase RecA Machinery gene
  LCH16_RS09005 (LCH16_09005) - 1793829..1795010 (+) 1182 WP_012117582.1 serine hydrolase -
  LCH16_RS09010 (LCH16_09010) rny 1795303..1796862 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 44995.30 Da        Isoelectric Point: 5.2503

>NTDB_id=608672 LCH16_RS08995 WP_060675475.1 1791197..1792447(+) (cinA) [Bacillus velezensis strain CSUSB3]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAQIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGIAAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLILKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=608672 LCH16_RS08995 WP_060675475.1 1791197..1792447(+) (cinA) [Bacillus velezensis strain CSUSB3]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCCGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGCAAATCGGTGTGAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGTCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCCTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTGCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-413)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

47.847

100

0.481
  cinA Streptococcus mitis SK321

47.368

100

0.476
  cinA Streptococcus pneumoniae TIGR4

46.89

100

0.471
  cinA Streptococcus pneumoniae R6

46.89

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.89

100

0.471
  cinA Streptococcus pneumoniae D39

46.651

100

0.469
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus suis isolate S10

40.921

93.99

0.385