Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEDC_RS01300 Genome accession   NZ_CP083571
Coordinates   279865..281094 (-) Length   409 a.a.
NCBI ID   WP_004281096.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain ED9-5a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 274865..286094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEDC_RS01275 (ABEDC_0264) - 276245..276568 (+) 324 WP_004281089.1 pyrimidine/purine nucleoside phosphorylase -
  ABEDC_RS01280 (ABEDC_0265) rlmB 276703..277452 (+) 750 WP_004281091.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEDC_RS01285 (ABEDC_0266) - 277459..278382 (+) 924 WP_004644926.1 DMT family transporter -
  ABEDC_RS01290 (ABEDC_0267) coaE 278404..279003 (-) 600 WP_004281093.1 dephospho-CoA kinase -
  ABEDC_RS01295 (ABEDC_0268) pilD 279005..279865 (-) 861 WP_004281094.1 A24 family peptidase Machinery gene
  ABEDC_RS01300 (ABEDC_0269) pilC 279865..281094 (-) 1230 WP_004281096.1 type II secretion system F family protein Machinery gene
  ABEDC_RS01305 (ABEDC_0270) pilB 281126..282835 (-) 1710 WP_004281098.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEDC_RS01310 (ABEDC_0271) tpiA 283113..283904 (+) 792 WP_004281100.1 triose-phosphate isomerase -
  ABEDC_RS01315 (ABEDC_0272) secG 283918..284247 (+) 330 WP_004281101.1 preprotein translocase subunit SecG -
  ABEDC_RS01345 (ABEDC_0278) rimP 285206..285730 (+) 525 WP_004281103.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44838.32 Da        Isoelectric Point: 9.8660

>NTDB_id=606221 ABEDC_RS01300 WP_004281096.1 279865..281094(-) (pilC) [Acinetobacter lwoffii strain ED9-5a]
MAAVKKGQMMPIFSYEGIDRKGAKIKGELPAKNMALAKVTLRKQGISIKTIREKKKNILEGLMKKKVSTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIY
KEKSELLKQKIKKAMKYPAAVVVVALIVTIILMVKVVPVFQDLFSSFGADLPAFTKMVVNMSEWMQKYWFLLIIAIGAVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEDAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAVLGVLVGGLVIAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=606221 ABEDC_RS01300 WP_004281096.1 279865..281094(-) (pilC) [Acinetobacter lwoffii strain ED9-5a]
ATGGCAGCAGTAAAGAAAGGCCAGATGATGCCGATCTTCAGCTATGAAGGAATTGATCGTAAAGGGGCAAAGATCAAGGG
GGAATTGCCAGCAAAAAATATGGCTCTGGCCAAGGTCACCCTTCGGAAACAAGGCATCAGCATCAAGACCATTCGGGAAA
AGAAAAAAAATATCCTTGAAGGCTTGATGAAGAAAAAAGTCTCAACACTGGATATTACAATTTTTACCCGACAGTTGGCG
ACCATGATGAAAGCCGGGGTACCACTGGTACAAGGCTTTGAAATTGTCGCAGAAGGTCTGGAAAATCCGGCGATGCGTGA
AGTTGTACTAGGAATTAAAGGTGAGGTTGAAGGCGGTAATACTTTTGCCGGAGCACTGCGCAAATATCCACAATATTTCG
ACAACCTATTCTGTTCACTGGTCGAATCTGGTGAACAATCTGGTGCTTTAGAAACCATGCTAGATCGCGTTGCGATTTAC
AAAGAAAAAAGCGAACTACTCAAGCAAAAAATCAAAAAAGCCATGAAATATCCTGCTGCGGTGGTTGTAGTCGCCCTAAT
TGTTACCATCATTCTGATGGTCAAAGTGGTCCCGGTTTTCCAGGATTTATTCTCTTCATTTGGTGCGGACTTACCGGCTT
TTACCAAAATGGTGGTCAATATGTCGGAATGGATGCAAAAGTATTGGTTCCTGCTGATTATCGCCATTGGGGCCGTGATT
ACCGCTTTTCTTGAAGCGAAAAAACGCAGCAAGAAATTCCGCGATTTTCTGGATAAGGCCGCACTCAAAGCCCCGATTTT
TGGTGACCTGGTGTATAAAGCGATTATTGCACGTTATAGCCGCACTTTGGCCACTACTTTCGCAGCTGGTGTTCCCTTGA
TTGATGCACTGGAATCCACTGCCGGCGCTACCAATAACGTCGTGTATGAAGATGCCGTGATGAAAATCCGTGAAGATGTC
GCCACAGGTCAACAACTACAGTTTGCCATGCGCGTGACCAACAAATTCCCATCCATGGCAGTACAAATGGTCGCGATTGG
TGAAGAATCTGGTGCACTAGATGCCATGCTAGACAAAGTAGCCACACATTATGAAAATGAAGTCGACAATGCAGTTGACG
GCTTAACCTCGATGATGGAACCGCTCATTATGGCTGTTCTCGGTGTGCTTGTCGGTGGTCTGGTGATTGCCATGTACCTT
CCAATTTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

90.418

99.511

0.9
  pilC Acinetobacter baylyi ADP1

83.292

99.511

0.829
  pilC Pseudomonas stutzeri DSM 10701

62.563

97.311

0.609
  pilC Legionella pneumophila strain ERS1305867

54.156

97.066

0.526
  pilG Neisseria gonorrhoeae MS11

46.231

97.311

0.45
  pilG Neisseria meningitidis 44/76-A

46.231

97.311

0.45
  pilC Vibrio cholerae strain A1552

43.627

99.756

0.435
  pilC Vibrio campbellii strain DS40M4

41.814

97.066

0.406