Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NLL86_RS00305 Genome accession   NZ_CP100660
Coordinates   71398..72495 (+) Length   365 a.a.
NCBI ID   WP_254482401.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain ZL22     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 66398..77495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLL86_RS00280 (NLL86_00280) - 66660..66974 (-) 315 WP_254482398.1 tetratricopeptide repeat protein -
  NLL86_RS00285 (NLL86_00285) trkA 66986..68359 (-) 1374 WP_099816075.1 Trk system potassium transporter TrkA -
  NLL86_RS00290 (NLL86_00290) rsmB 68384..69694 (-) 1311 WP_254482399.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  NLL86_RS00295 (NLL86_00295) fmt 69691..70623 (-) 933 WP_254482400.1 methionyl-tRNA formyltransferase -
  NLL86_RS00300 (NLL86_00300) def 70684..71190 (-) 507 WP_054884415.1 peptide deformylase -
  NLL86_RS00305 (NLL86_00305) dprA 71398..72495 (+) 1098 WP_254482401.1 DNA-processing protein DprA Machinery gene
  NLL86_RS00310 (NLL86_00310) - 72540..73097 (+) 558 WP_176508443.1 L-threonylcarbamoyladenylate synthase -
  NLL86_RS00315 (NLL86_00315) - 73754..74071 (+) 318 WP_254482402.1 hypothetical protein -
  NLL86_RS00320 (NLL86_00320) - 74371..74655 (+) 285 WP_254482403.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  NLL86_RS00325 (NLL86_00325) - 74621..74929 (+) 309 WP_254482404.1 Txe/YoeB family addiction module toxin -
  NLL86_RS00330 (NLL86_00330) - 75119..76084 (-) 966 WP_368044934.1 NADPH:quinone reductase -
  NLL86_RS28090 - 76069..76113 (-) 45 Protein_68 hypothetical protein -
  NLL86_RS00335 (NLL86_00335) hemF 76232..77143 (+) 912 WP_254482406.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 38892.73 Da        Isoelectric Point: 6.7791

>NTDB_id=606010 NLL86_RS00305 WP_254482401.1 71398..72495(+) (dprA) [Pseudomonas fluorescens strain ZL22]
MPIYHSSHYPPAELEARLRLHRLPETGMRRFRTLIDAFGSASSALSAPGPAWRALGIPQATIDARRSAEVREGALAAMAW
LEVPGQHLLMWDGPEYPALLAEIDDAPPLLFVAGNPALLDRPQLAIVGSRRATPPALDTARAFSRCLAQAGFTITSGLAL
GIDGAAHRATLEVGGGTIGVLGTGLQKLYPQRHRDLARMMIDMGGALVSEYPLDAGPLPGNFPRRNRIISGLSLGVLVVE
ASLASGSLITARLAAEQGREVYAIPGSIHHPAAKGCHQLIRDGALLVESVEQILESLRGWQNLPPAVVDKPEHPLLALLH
AAPQTSENLAHFGDLPLAEVLAQLTELELEGRVSNVAGRWFARAG

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=606010 NLL86_RS00305 WP_254482401.1 71398..72495(+) (dprA) [Pseudomonas fluorescens strain ZL22]
ATGCCGATTTACCATTCGTCGCATTACCCACCTGCCGAACTGGAGGCACGCTTGCGCTTGCATCGCCTGCCCGAGACGGG
GATGCGACGATTTCGCACCTTGATCGATGCGTTTGGCAGCGCCAGTTCTGCGCTCAGCGCACCTGGCCCCGCCTGGCGTG
CGTTAGGCATTCCTCAAGCCACCATCGATGCTCGGCGCAGTGCCGAAGTGCGTGAGGGCGCACTGGCTGCAATGGCTTGG
CTAGAGGTTCCGGGCCAGCATTTACTGATGTGGGACGGCCCTGAGTACCCGGCGCTGCTGGCGGAAATCGACGATGCTCC
ACCACTGCTTTTCGTTGCTGGCAATCCAGCCCTGCTCGACCGACCTCAACTGGCCATCGTGGGCAGCAGGCGTGCCACAC
CTCCCGCGCTCGACACTGCCAGGGCATTTTCCCGCTGCCTGGCGCAGGCCGGCTTCACCATCACCAGTGGGCTCGCCCTC
GGGATTGACGGTGCCGCTCATCGGGCAACGCTGGAGGTCGGAGGGGGCACGATCGGGGTGCTCGGCACAGGCTTGCAAAA
ACTTTATCCACAGCGCCACCGCGACCTGGCCCGGATGATGATCGACATGGGCGGTGCACTGGTGTCCGAGTATCCGCTGG
ATGCCGGGCCACTGCCTGGCAACTTCCCGCGGCGCAACCGCATTATCAGCGGCCTGTCGCTTGGCGTGCTGGTGGTTGAG
GCCAGCCTTGCCAGTGGCTCGCTGATCACCGCCCGCCTGGCGGCTGAGCAAGGCCGCGAGGTTTACGCGATTCCAGGGTC
CATCCACCACCCGGCGGCCAAGGGTTGCCACCAGCTGATCCGCGATGGCGCCCTGCTGGTGGAGAGCGTGGAGCAGATTC
TGGAAAGCCTGCGTGGTTGGCAGAACCTGCCACCAGCGGTTGTGGATAAACCGGAGCATCCGCTGCTTGCCCTGCTGCAT
GCCGCCCCACAGACTAGCGAGAACCTGGCCCATTTCGGCGACCTGCCCCTGGCCGAAGTGCTGGCGCAACTGACGGAACT
GGAGCTCGAAGGCCGTGTCAGCAATGTTGCCGGGCGTTGGTTTGCCCGCGCGGGCTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(84-288)

DprA winged helix domain (WHD_DprA)

(304-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

43.251

99.452

0.43
  dprA Legionella pneumophila strain ERS1305867

41.598

99.452

0.414
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

42.33

96.438

0.408
  dprA Acinetobacter baylyi ADP1

41.36

96.712

0.4
  dprA Neisseria meningitidis MC58

45.625

87.671

0.4
  dprA Neisseria meningitidis strain C311

45.625

87.671

0.4
  dprA Neisseria gonorrhoeae MS11

47.423

79.726

0.378
  dprA Neisseria gonorrhoeae strain FA1090

47.079

79.726

0.375
  dprA Acinetobacter baumannii strain A118

37.95

98.904

0.375
  dprA Acinetobacter baumannii D1279779

37.673

98.904

0.373