Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   HK81_RS21550 Genome accession   NC_021848
Coordinates   2963799..2964911 (+) Length   370 a.a.
NCBI ID   WP_020904434.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:K33 str. CDC_K4557     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2958799..2969911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK81_RS21530 (M636_22015) rsmB 2959719..2961002 (-) 1284 WP_015297514.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  HK81_RS21535 (M636_22020) fmt 2961083..2962030 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  HK81_RS21540 (M636_22025) def 2962064..2962582 (-) 519 WP_005461416.1 peptide deformylase -
  HK81_RS21545 (M636_22030) - 2962721..2963815 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  HK81_RS21550 (M636_22035) dprA 2963799..2964911 (+) 1113 WP_020904434.1 DNA-processing protein DprA Machinery gene
  HK81_RS21555 (M636_22040) - 2964914..2965393 (+) 480 WP_005461440.1 DUF494 family protein -
  HK81_RS21560 (M636_22045) - 2965472..2966041 (+) 570 WP_020904435.1 type I DNA topoisomerase -
  HK81_RS21565 (M636_22050) - 2966105..2967238 (-) 1134 WP_020904436.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  HK81_RS21570 (M636_22055) purE 2967243..2967728 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  HK81_RS21575 (M636_22060) - 2967928..2968485 (+) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  HK81_RS21580 (M636_22065) hemF 2968533..2969450 (+) 918 WP_020904437.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39980.61 Da        Isoelectric Point: 6.5005

>NTDB_id=60585 HK81_RS21550 WP_020904434.1 2963799..2964911(+) (dprA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTHKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITTRYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=60585 HK81_RS21550 WP_020904434.1 2963799..2964911(+) (dprA) [Vibrio parahaemolyticus O1:K33 str. CDC_K4557]
ATGAAACCACGCAATAATGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGC
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGAGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCACGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.378

100

0.584
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

38.619

100

0.408
  dprA Neisseria meningitidis MC58

38.619

100

0.408
  dprA Neisseria gonorrhoeae MS11

36.504

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.247

100

0.381

Multiple sequence alignment