Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HK86_RS14620 Genome accession   NC_021847
Coordinates   3130190..3131413 (+) Length   407 a.a.
NCBI ID   WP_020841260.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus O1:Kuk str. FDA_R31     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3125190..3136413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK86_RS14600 (M634_14980) ampD 3126245..3126796 (-) 552 WP_020841256.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HK86_RS14605 (M634_14985) nadC 3126889..3127776 (+) 888 WP_020841257.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HK86_RS14610 (M634_14990) - 3128040..3128480 (+) 441 WP_020841258.1 pilin -
  HK86_RS14615 (M634_14995) pilB 3128480..3130165 (+) 1686 WP_020841259.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HK86_RS14620 (M634_15000) pilC 3130190..3131413 (+) 1224 WP_020841260.1 type II secretion system F family protein Machinery gene
  HK86_RS14625 (M634_15005) pilD 3131478..3132347 (+) 870 WP_020841261.1 A24 family peptidase Machinery gene
  HK86_RS14630 (M634_15010) coaE 3132348..3132962 (+) 615 WP_005480887.1 dephospho-CoA kinase -
  HK86_RS14635 (M634_15015) zapD 3132990..3133730 (+) 741 WP_023624252.1 cell division protein ZapD -
  HK86_RS14640 (M634_15020) yacG 3133799..3133993 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  HK86_RS14645 (M634_15030) rplS 3134288..3134641 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  HK86_RS14650 (M634_15035) trmD 3134683..3135426 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HK86_RS14655 (M634_15040) rimM 3135454..3136002 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  HK86_RS14660 (M634_15045) rpsP 3136031..3136279 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45261.44 Da        Isoelectric Point: 10.4368

>NTDB_id=60542 HK86_RS14620 WP_020841260.1 3130190..3131413(+) (pilC) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKNSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISLFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKILEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=60542 HK86_RS14620 WP_020841260.1 3130190..3131413(+) (pilC) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAACAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGAAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGTAACCATTTTGACCCGCTGT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCCACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAGGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGTGCTGAACTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGTTCCATCAGTTTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGTTTAATGCTCAACCGATCTGTACTTAAGTTTCCAGTCCTTGGGGCGGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACACTCGCTACGAGCTTTACGGCGGGCATTCCGATTCTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAATCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTAGTCACCGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

86.241

100

0.862
  pilC Vibrio cholerae strain A1552

74.321

99.509

0.74
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.299

98.771

0.398
  pilG Neisseria meningitidis 44/76-A

40

99.509

0.398
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398

Multiple sequence alignment