Detailed information NTG0060543

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HK86_RS14625
• Genome accession: NC_021847
• Coordinates: 3131478..3132347 (+)
• Length: 289 a.a.
• NCBI ID: WP_020841261.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus O1:Kuk str. FDA_R31
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3126478..3137347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HK86_RS14605 (M634_14985)	nadC	3126889..3127776 (+)	888	WP_020841257.1	carboxylating nicotinate-nucleotide diphosphorylase	-
HK86_RS14610 (M634_14990)	-	3128040..3128480 (+)	441	WP_020841258.1	pilin	-
HK86_RS14615 (M634_14995)	pilB	3128480..3130165 (+)	1686	WP_020841259.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HK86_RS14620 (M634_15000)	pilC	3130190..3131413 (+)	1224	WP_020841260.1	type II secretion system F family protein	Machinery gene
HK86_RS14625 (M634_15005)	pilD	3131478..3132347 (+)	870	WP_020841261.1	A24 family peptidase	Machinery gene
HK86_RS14630 (M634_15010)	coaE	3132348..3132962 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
HK86_RS14635 (M634_15015)	zapD	3132990..3133730 (+)	741	WP_023624252.1	cell division protein ZapD	-
HK86_RS14640 (M634_15020)	yacG	3133799..3133993 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
HK86_RS14645 (M634_15030)	rplS	3134288..3134641 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
HK86_RS14650 (M634_15035)	trmD	3134683..3135426 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
HK86_RS14655 (M634_15040)	rimM	3135454..3136002 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
HK86_RS14660 (M634_15045)	rpsP	3136031..3136279 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32451.57 Da
• Isoelectric Point: 7.1971

>NTDB_id=60543 HK86_RS14625 WP_020841261.1 3131478..3132347(+) (pilD) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSMPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEVSPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGVWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=60543 HK86_RS14625 WP_020841261.1 3131478..3132347(+) (pilD) [Vibrio parahaemolyticus O1:Kuk str. FDA_R31]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTAAGCATGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACTGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAGTAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGTTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	88.235	100	0.882
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	51.866	92.734	0.481
pilD	Acinetobacter nosocomialis M2	51.493	92.734	0.478
pilD	Neisseria gonorrhoeae MS11	46.739	95.502	0.446