Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K9N54_RS17095 Genome accession   NZ_CP083361
Coordinates   3552855..3553967 (-) Length   370 a.a.
NCBI ID   WP_025578089.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 20-082E4     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3547855..3558967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K9N54_RS17065 (K9N54_16945) hemF 3548316..3549233 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  K9N54_RS17070 (K9N54_16950) - 3549281..3549838 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  K9N54_RS17075 (K9N54_16955) purE 3550038..3550523 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K9N54_RS17080 (K9N54_16960) - 3550528..3551655 (+) 1128 WP_025793165.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K9N54_RS17085 (K9N54_16965) - 3551725..3552294 (-) 570 WP_025793166.1 type I DNA topoisomerase -
  K9N54_RS17090 (K9N54_16970) - 3552373..3552852 (-) 480 WP_005461440.1 DUF494 family protein -
  K9N54_RS17095 (K9N54_16975) dprA 3552855..3553967 (-) 1113 WP_025578089.1 DNA-processing protein DprA Machinery gene
  K9N54_RS17100 (K9N54_16980) - 3553951..3555045 (-) 1095 WP_025793167.1 LysM peptidoglycan-binding domain-containing protein -
  K9N54_RS17105 (K9N54_16985) def 3555184..3555702 (+) 519 WP_005461416.1 peptide deformylase -
  K9N54_RS17110 (K9N54_16990) fmt 3555736..3556683 (+) 948 WP_020839886.1 methionyl-tRNA formyltransferase -
  K9N54_RS17115 (K9N54_16995) rsmB 3556764..3558047 (+) 1284 WP_025588393.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39899.56 Da        Isoelectric Point: 6.4129

>NTDB_id=605393 K9N54_RS17095 WP_025578089.1 3552855..3553967(-) (dprA) [Vibrio parahaemolyticus strain 20-082E4]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=605393 K9N54_RS17095 WP_025578089.1 3552855..3553967(-) (dprA) [Vibrio parahaemolyticus strain 20-082E4]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGTAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.595

100

0.846
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.692

100

0.397
  dprA Neisseria meningitidis MC58

37.692

100

0.397
  dprA Neisseria gonorrhoeae MS11

35.825

100

0.376
  dprA Neisseria gonorrhoeae strain FA1090

35.567

100

0.373