Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   K8Z33_RS17270 Genome accession   NZ_CP083134
Coordinates   3388767..3389051 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus thuringiensis strain BMP144     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383767..3394051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8Z33_RS17255 (K8Z33_17200) rnmV 3384598..3385155 (-) 558 WP_000692840.1 ribonuclease M5 -
  K8Z33_RS17260 (K8Z33_17205) - 3385371..3386138 (-) 768 WP_000895845.1 TatD family hydrolase -
  K8Z33_RS17265 (K8Z33_17210) metG 3386305..3388287 (-) 1983 WP_000134138.1 methionine--tRNA ligase -
  K8Z33_RS17270 (K8Z33_17215) abrB 3388767..3389051 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  K8Z33_RS17275 (K8Z33_17220) rsmI 3389072..3389947 (-) 876 WP_000267816.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K8Z33_RS17280 (K8Z33_17225) - 3389916..3390206 (-) 291 WP_000414353.1 GIY-YIG nuclease family protein -
  K8Z33_RS17285 (K8Z33_17230) - 3390193..3390933 (-) 741 WP_001055358.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  K8Z33_RS17290 (K8Z33_17235) yabA 3391016..3391366 (-) 351 WP_000412064.1 DNA replication initiation control protein YabA -
  K8Z33_RS17295 (K8Z33_17240) - 3391381..3392208 (-) 828 WP_000272429.1 PSP1 domain-containing protein -
  K8Z33_RS17300 (K8Z33_17245) holB 3392214..3393197 (-) 984 WP_000978578.1 DNA polymerase III subunit delta' -
  K8Z33_RS17305 (K8Z33_17250) tmk 3393233..3393859 (-) 627 WP_000677218.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=604785 K8Z33_RS17270 WP_000843036.1 3388767..3389051(+) (abrB) [Bacillus thuringiensis strain BMP144]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=604785 K8Z33_RS17270 WP_000843036.1 3388767..3389051(+) (abrB) [Bacillus thuringiensis strain BMP144]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTATGTTGATGACGAGAAAATCATCTTAAAAAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851