Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K6806_RS15835 Genome accession   NZ_CP082319
Coordinates   3303161..3304270 (-) Length   369 a.a.
NCBI ID   WP_085570046.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain XWV9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3298161..3309270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6806_RS15805 (K6806_15695) hemF 3298631..3299548 (-) 918 WP_053350839.1 oxygen-dependent coproporphyrinogen oxidase -
  K6806_RS15810 (K6806_15700) - 3299596..3300153 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  K6806_RS15815 (K6806_15705) purE 3300353..3300838 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K6806_RS15820 (K6806_15710) - 3300843..3301976 (+) 1134 WP_085570044.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K6806_RS15825 (K6806_15715) - 3302033..3302602 (-) 570 WP_085570045.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K6806_RS15830 (K6806_15720) - 3302679..3303158 (-) 480 WP_005379074.1 DUF494 family protein -
  K6806_RS15835 (K6806_15725) dprA 3303161..3304270 (-) 1110 WP_085570046.1 DNA-processing protein DprA Machinery gene
  K6806_RS15840 (K6806_15730) - 3304254..3305348 (-) 1095 WP_017821578.1 LysM peptidoglycan-binding domain-containing protein -
  K6806_RS15845 (K6806_15735) def 3305487..3306005 (+) 519 WP_005379068.1 peptide deformylase -
  K6806_RS15850 (K6806_15740) fmt 3306039..3306986 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  K6806_RS15855 (K6806_15745) rsmB 3307067..3308350 (+) 1284 WP_017821576.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40002.75 Da        Isoelectric Point: 6.8228

>NTDB_id=601443 K6806_RS15835 WP_085570046.1 3303161..3304270(-) (dprA) [Vibrio alginolyticus strain XWV9]
MNLRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=601443 K6806_RS15835 WP_085570046.1 3303161..3304270(-) (dprA) [Vibrio alginolyticus strain XWV9]
ATGAATCTACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTGCCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCGCGTAACATCGTAAACTTCTCTCCCGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAACATGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTGCTGGTCGTCGAGGCGGCGAAAAAGAGTGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTAGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.469

100

0.835
  dprA Vibrio cholerae strain A1552

57.027

100

0.572
  dprA Glaesserella parasuis strain SC1401

46.505

100

0.469
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

45.245

94.038

0.425
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379