Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NC516_RS01760 Genome accession   NZ_CP099485
Coordinates   371924..372520 (+) Length   198 a.a.
NCBI ID   WP_011374047.1    Uniprot ID   Q38YT8
Organism   Latilactobacillus sakei strain WiKim0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 366924..377520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS01730 (NC516_01730) - 367802..368407 (+) 606 WP_085391630.1 class I SAM-dependent methyltransferase -
  NC516_RS01735 (NC516_01735) - 368480..368824 (+) 345 WP_016264616.1 hypothetical protein -
  NC516_RS01740 (NC516_01740) tadA 368905..369423 (+) 519 WP_035147305.1 tRNA adenosine(34) deaminase TadA -
  NC516_RS01750 (NC516_01750) dnaX 369848..371563 (+) 1716 WP_252814949.1 DNA polymerase III subunit gamma/tau -
  NC516_RS01755 (NC516_01755) - 371590..371898 (+) 309 WP_016264619.1 YbaB/EbfC family nucleoid-associated protein -
  NC516_RS01760 (NC516_01760) recR 371924..372520 (+) 597 WP_011374047.1 recombination mediator RecR Machinery gene
  NC516_RS01765 (NC516_01765) - 372537..372791 (+) 255 WP_011374048.1 YaaL family protein -
  NC516_RS01770 (NC516_01770) tmk 372934..373578 (+) 645 WP_016264620.1 dTMP kinase -
  NC516_RS01775 (NC516_01775) - 373593..373922 (+) 330 WP_011374050.1 cyclic-di-AMP receptor -
  NC516_RS01780 (NC516_01780) holB 373926..374918 (+) 993 WP_035147293.1 DNA polymerase III subunit delta' -
  NC516_RS01785 (NC516_01785) - 374970..375323 (+) 354 WP_011374052.1 DNA replication initiation control protein YabA -
  NC516_RS01790 (NC516_01790) rsmI 375422..376300 (+) 879 WP_011374053.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  NC516_RS01795 (NC516_01795) - 376311..377057 (+) 747 WP_035147289.1 acyl-ACP thioesterase domain-containing protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22051.38 Da        Isoelectric Point: 5.1115

>NTDB_id=601443 NC516_RS01760 WP_011374047.1 371924..372520(+) (recR) [Latilactobacillus sakei strain WiKim0095]
MQYPEPIAKLIESYMKLPGIGNKTATRLAFYTIDMNEDDVTNFAKNLISARRDLHYCSVCGNITDEDPCEICRDTARSQE
MILVVEQPKDVMSMERMNDYHGLYHVLHGVLSPIEGKGPDDINIANLIKRLQKTPAKEVIIATNATPEGEATAMYISRLI
KPAGIKVTRLAHGLAVGSDIEYADEMTLLKAVEGRQEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=601443 NC516_RS01760 WP_011374047.1 371924..372520(+) (recR) [Latilactobacillus sakei strain WiKim0095]
ATGCAATATCCAGAACCAATTGCGAAGCTAATCGAAAGTTATATGAAGTTACCAGGCATTGGTAACAAAACAGCAACGCG
ATTAGCTTTTTATACGATTGATATGAATGAAGATGACGTGACTAACTTTGCCAAGAATCTGATTTCAGCACGCCGAGACC
TCCATTATTGTAGTGTCTGTGGCAATATCACTGATGAAGATCCTTGTGAGATTTGTCGGGATACCGCGCGTAGTCAGGAA
ATGATTTTGGTGGTCGAACAACCTAAAGATGTGATGTCGATGGAACGGATGAACGATTATCACGGTCTCTATCACGTCTT
GCACGGGGTGTTGTCACCAATTGAAGGTAAAGGGCCAGACGATATTAATATTGCTAATTTAATTAAACGACTCCAAAAAA
CACCAGCTAAAGAAGTCATCATCGCCACCAATGCAACGCCCGAAGGGGAAGCAACGGCGATGTATATTTCACGGCTAATT
AAGCCGGCCGGGATTAAAGTCACTCGCTTAGCCCATGGTTTAGCGGTCGGGAGCGATATTGAATATGCGGATGAGATGAC
TTTATTAAAAGCAGTCGAGGGTCGTCAAGAAATCTAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38YT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

66.667

100

0.667
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.98

100

0.48