Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K6754_RS15720 Genome accession   NZ_CP082317
Coordinates   3326497..3327606 (-) Length   369 a.a.
NCBI ID   WP_053308101.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain SXV3     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3321497..3332606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6754_RS15690 (K6754_15630) hemF 3321967..3322884 (-) 918 WP_047104448.1 oxygen-dependent coproporphyrinogen oxidase -
  K6754_RS15695 (K6754_15635) - 3322932..3323489 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  K6754_RS15700 (K6754_15640) purE 3323689..3324174 (+) 486 WP_033906572.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K6754_RS15705 (K6754_15645) - 3324179..3325312 (+) 1134 WP_053308099.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K6754_RS15710 (K6754_15650) - 3325369..3325938 (-) 570 WP_053308100.1 type I DNA topoisomerase -
  K6754_RS15715 (K6754_15655) - 3326015..3326494 (-) 480 WP_005379074.1 DUF494 family protein -
  K6754_RS15720 (K6754_15660) dprA 3326497..3327606 (-) 1110 WP_053308101.1 DNA-processing protein DprA Machinery gene
  K6754_RS15725 (K6754_15665) - 3327590..3328684 (-) 1095 WP_047102570.1 LysM peptidoglycan-binding domain-containing protein -
  K6754_RS15730 (K6754_15670) def 3328823..3329341 (+) 519 WP_005379068.1 peptide deformylase -
  K6754_RS15735 (K6754_15675) fmt 3329375..3330322 (+) 948 WP_053308102.1 methionyl-tRNA formyltransferase -
  K6754_RS15740 (K6754_15680) rsmB 3330403..3331686 (+) 1284 WP_238974904.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39996.75 Da        Isoelectric Point: 7.2604

>NTDB_id=601396 K6754_RS15720 WP_053308101.1 3326497..3327606(-) (dprA) [Vibrio alginolyticus strain SXV3]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDAPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARHFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLANIYPARHRSLAQRVIEHGALVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=601396 K6754_RS15720 WP_053308101.1 3326497..3327606(-) (dprA) [Vibrio alginolyticus strain SXV3]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACGCGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGCTTACAGCATGCTC
GCCACTTTGCCGCCGAATTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCCGGTGGTAAGACGATTGCGGTGCTAGGATCTGGTTTAGCAAATATTTATCCAGCACGTCATCG
TAGTTTAGCGCAACGTGTTATTGAACACGGGGCTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTGCTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.656

100

0.827
  dprA Vibrio cholerae strain A1552

56.757

100

0.569
  dprA Glaesserella parasuis strain SC1401

46.774

100

0.472
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.121

100

0.398
  dprA Neisseria meningitidis MC58

37.121

100

0.398
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379