Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   K6749_RS15385 Genome accession   NZ_CP082310
Coordinates   3292592..3293701 (-) Length   369 a.a.
NCBI ID   WP_158157060.1    Uniprot ID   A0A7Y4EZD2
Organism   Vibrio alginolyticus strain HYV1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3287592..3298701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6749_RS15355 (K6749_15275) hemF 3288053..3288970 (-) 918 WP_005379086.1 oxygen-dependent coproporphyrinogen oxidase -
  K6749_RS15360 (K6749_15280) - 3289018..3289575 (-) 558 WP_005379084.1 L-threonylcarbamoyladenylate synthase -
  K6749_RS15365 (K6749_15285) purE 3289775..3290260 (+) 486 WP_005379082.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  K6749_RS15370 (K6749_15290) - 3290265..3291398 (+) 1134 WP_158157064.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  K6749_RS15375 (K6749_15295) - 3291464..3292033 (-) 570 WP_047102572.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  K6749_RS15380 (K6749_15300) - 3292110..3292589 (-) 480 WP_005379074.1 DUF494 family protein -
  K6749_RS15385 (K6749_15305) dprA 3292592..3293701 (-) 1110 WP_158157060.1 DNA-processing protein DprA Machinery gene
  K6749_RS15390 (K6749_15310) - 3293685..3294779 (-) 1095 WP_053304038.1 LysM peptidoglycan-binding domain-containing protein -
  K6749_RS15395 (K6749_15315) def 3294918..3295436 (+) 519 WP_005379068.1 peptide deformylase -
  K6749_RS15400 (K6749_15320) fmt 3295470..3296417 (+) 948 WP_005379066.1 methionyl-tRNA formyltransferase -
  K6749_RS15405 (K6749_15325) rsmB 3296498..3297781 (+) 1284 WP_213916160.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 40099.86 Da        Isoelectric Point: 6.9578

>NTDB_id=601255 K6749_RS15385 WP_158157060.1 3292592..3293701(-) (dprA) [Vibrio alginolyticus strain HYV1]
MNRRNNDDLAAWLKLSCLPGIGGVKMNKLLARDTPRNIVNFSPEQLQQLGLTTKQIQAWASTDKEVDACLSWLEASTNHH
ILTLTDPRYPPQLKQIVAPPPLLFVQGNPTCLSQPQIAMVGSRNASIDGLQHARQFAAEFVQHDFIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLENIYPARHRGLAQRVIEYGVLVSEFRPNAKPRPENFPRRNRIISGLSLGVLVVEAAKKSGSL
ITARYALEQGREVFALPASINAPNACGGNQLIRHGACLVEKTKDVLDEIQSLLDWSINQSTDLFSTLNDEEELPFPQLLA
NVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=601255 K6749_RS15385 WP_158157060.1 3292592..3293701(-) (dprA) [Vibrio alginolyticus strain HYV1]
ATGAATCGACGAAATAACGATGATCTCGCTGCCTGGTTAAAACTGAGTTGTTTACCAGGCATTGGCGGCGTCAAAATGAA
TAAGCTACTGGCAAGAGACACGCCACGTAACATCGTAAACTTCTCTCCTGAACAGCTACAACAACTTGGGTTAACAACTA
AGCAAATTCAAGCTTGGGCTTCAACAGATAAAGAAGTCGATGCTTGTTTAAGCTGGCTTGAGGCTTCTACAAATCATCAT
ATCCTGACACTGACTGACCCGCGTTATCCACCTCAACTCAAACAAATCGTTGCACCGCCACCTCTACTTTTTGTTCAAGG
AAACCCTACTTGTCTCTCTCAGCCACAAATCGCGATGGTTGGCAGTCGAAATGCGAGTATTGATGGATTACAGCATGCAC
GTCAGTTTGCTGCAGAGTTTGTTCAGCACGATTTTATTGTCACCAGTGGTCTCGCTTTAGGCATTGATGGTCATGCGCAT
GATGGTGCGTTGCAAGCGGGTGGTAAGACGATTGCGGTGCTAGGATCTGGCTTAGAAAATATTTATCCGGCACGTCATCG
TGGTTTAGCGCAACGTGTTATTGAATATGGGGTTTTGGTGTCTGAGTTTCGGCCTAATGCCAAGCCGCGCCCAGAAAACT
TCCCGCGTCGTAATCGTATTATTAGTGGATTATCGCTTGGTGTACTGGTCGTCGAGGCGGCGAAAAAGAGCGGCTCGTTA
ATTACAGCTCGTTACGCGCTTGAGCAAGGTCGAGAAGTATTTGCGCTGCCAGCGTCAATCAATGCCCCCAATGCCTGCGG
TGGAAACCAGTTGATACGTCATGGCGCTTGCCTCGTAGAAAAGACGAAAGATGTCTTAGATGAAATACAGTCCTTGCTTG
ATTGGTCTATTAATCAGAGTACTGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGTTAGAACTCTCTGGGCATGTCGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4EZD2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

83.198

100

0.832
  dprA Vibrio cholerae strain A1552

56.757

100

0.569
  dprA Glaesserella parasuis strain SC1401

46.237

100

0.466
  dprA Legionella pneumophila strain ERS1305867

44.875

97.832

0.439
  dprA Haemophilus influenzae Rd KW20

44.957

94.038

0.423
  dprA Neisseria meningitidis strain C311

37.374

100

0.401
  dprA Neisseria meningitidis MC58

37.374

100

0.401
  dprA Neisseria gonorrhoeae MS11

35.787

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

35.533

100

0.379