Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   NEH83_RS10975 Genome accession   NZ_CP098783
Coordinates   2490476..2491159 (-) Length   227 a.a.
NCBI ID   WP_030077756.1    Uniprot ID   A0ABW2M5Q5
Organism   Streptomyces sp. JUS-F4     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2485476..2496159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NEH83_RS10965 (NEH83_10970) - 2487934..2488947 (+) 1014 WP_030077759.1 hypothetical protein -
  NEH83_RS10970 (NEH83_10975) clpX 2489021..2490319 (-) 1299 WP_030625971.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  NEH83_RS10975 (NEH83_10980) clpP 2490476..2491159 (-) 684 WP_030077756.1 ATP-dependent Clp protease proteolytic subunit Regulator
  NEH83_RS10980 (NEH83_10985) - 2491242..2491847 (-) 606 WP_030077754.1 ATP-dependent Clp protease proteolytic subunit -
  NEH83_RS10985 (NEH83_10990) tig 2492114..2493514 (-) 1401 WP_030625970.1 trigger factor -
  NEH83_RS11000 (NEH83_11005) - 2494114..2494308 (-) 195 WP_026290750.1 hypothetical protein -
  NEH83_RS11005 (NEH83_11010) - 2494819..2495997 (+) 1179 WP_030625966.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24884.28 Da        Isoelectric Point: 4.7981

>NTDB_id=601053 NEH83_RS10975 WP_030077756.1 2490476..2491159(-) (clpP) [Streptomyces sp. JUS-F4]
MVKTHMNNYTGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLARHSTTPLEKISEDIERDKILTAEDALAYGLVDQIVSTRKTTAGASL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=601053 NEH83_RS10975 WP_030077756.1 2490476..2491159(-) (clpP) [Streptomyces sp. JUS-F4]
ATGGTGAAGACCCACATGAACAACTACACCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTGGGCGTCCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGAC
CCCGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTCGCCGCGGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGGGTCCTCATCCACCAGCCGTCCTCGCAGACGGGCCGCGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTCCGCATGCGGACGCAGCTGGAGGAGATGCTGGCCCGCCACTCGACGACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCCCTCGCGTACGGTCTGGTCGACC
AGATCGTTTCCACCCGCAAGACCACCGCGGGCGCATCGCTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50.526

83.7

0.423
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.34

82.819

0.392
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus pyogenes JRS4

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus pyogenes MGAS315

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

43.299

85.463

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37
  clpP Streptococcus pneumoniae Rx1

43.523

85.022

0.37
  clpP Streptococcus pneumoniae D39

43.523

85.022

0.37
  clpP Streptococcus pneumoniae R6

43.523

85.022

0.37
  clpP Streptococcus pneumoniae TIGR4

43.523

85.022

0.37