Detailed information NTG0601052

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: NEH83_RS10970
• Genome accession: NZ_CP098783
• Coordinates: 2489021..2490319 (-)
• Length: 432 a.a.
• NCBI ID: WP_030625971.1
• Uniprot ID: A0ABQ2SJP2
• Organism: Streptomyces sp. JUS-F4
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 2484021..2495319

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NEH83_RS10960 (NEH83_10965)	-	2485175..2487796 (-)	2622	WP_302212868.1	valine--tRNA ligase	-
NEH83_RS10965 (NEH83_10970)	-	2487934..2488947 (+)	1014	WP_030077759.1	hypothetical protein	-
NEH83_RS10970 (NEH83_10975)	clpX	2489021..2490319 (-)	1299	WP_030625971.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
NEH83_RS10975 (NEH83_10980)	clpP	2490476..2491159 (-)	684	WP_030077756.1	ATP-dependent Clp protease proteolytic subunit	Regulator
NEH83_RS10980 (NEH83_10985)	-	2491242..2491847 (-)	606	WP_030077754.1	ATP-dependent Clp protease proteolytic subunit	-
NEH83_RS10985 (NEH83_10990)	tig	2492114..2493514 (-)	1401	WP_030625970.1	trigger factor	-
NEH83_RS11000 (NEH83_11005)	-	2494114..2494308 (-)	195	WP_026290750.1	hypothetical protein	-

Sequence

Protein

• Length: 432 a.a.
• Molecular weight: 47329.19 Da
• Isoelectric Point: 4.7866

>NTDB_id=601052 NEH83_RS10970 WP_030625971.1 2489021..2490319(-) (clpX) [Streptomyces sp. JUS-F4]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLEGYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGAGREDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLEKIIESRAGAKGIGFGATIRSKLEIQASDQFQEVMPEDLVKFGMIPEFIGRLPVLTSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELEFEREALEAIADQAILRQTGARGLRAIMEEVLQSVMYEVPSRKDVARVVIT
PDVVRDNVNPTLVPREPRTIGKNDGGRHEKSA

Nucleotide

• Length: 1299 bp

>NTDB_id=601052 NEH83_RS10970 WP_030625971.1 2489021..2490319(-) (clpX) [Streptomyces sp. JUS-F4]
GTGGCACGCATCGGTGATGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGATCTCTGCAACGAGATCATCGAGGAGGAGCTCGCGGAGACGA
GCGAGGTGCGCTGGGAAGAGCTTCCCAAGCCCCGCGAGATCTACGAGTTCCTGGAGGGGTACGTCGTCGGGCAGGAGCCC
GCGAAGAAGGCCCTCTCGGTCGCGGTGTACAACCACTACAAGCGGGTCCAGGCCGGGGAGAACGGCGGCGGCGCGGGTCG
TGAGGACGCGATCGAGCTCGCCAAGTCGAACATCCTCCTGCTGGGCCCCACGGGTTCCGGCAAGACGCTCCTAGCGCAGA
CGCTCGCCCGCATGCTCAACGTCCCGTTCGCCATCGCGGACGCGACGGCGCTGACGGAGGCCGGCTATGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCGGCCGACTACGACGTCAAGAAGGCCGAGACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACCCGCGATGTCTCCGGCGAGGGCGTGCAGCAGGCCC
TGCTGAAGATCCTGGAGGGCACCACCGCCTCCGTCCCGCCGCAGGGCGGACGCAAGCACCCCCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCGTTCTCCGGCCTGGAGAAGATCATCGAGTCCCGGGCCGGCGC
CAAGGGCATCGGCTTCGGCGCCACGATCCGCTCCAAGCTGGAGATCCAGGCGAGCGACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTGCTGACCTCGGTCCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCCCTGGTCAAGCAGTACCAGCGCCTCTTCGAACTCGACGGCGT
GGAGCTGGAGTTCGAGCGCGAGGCGCTGGAGGCCATCGCCGACCAGGCGATCCTGCGCCAGACCGGCGCGCGCGGTCTGC
GGGCGATCATGGAGGAAGTCCTCCAGTCCGTGATGTACGAGGTGCCGTCCCGCAAGGACGTCGCCCGCGTCGTCATCACC
CCGGACGTCGTCCGCGACAACGTCAACCCGACGCTGGTCCCGCGCGAGCCGCGCACGATCGGCAAGAACGACGGCGGCCG
GCACGAGAAGTCCGCGTAG

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (115-311)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (318-395)

• ClpX C4-type zinc finger (zf-C4_ClpX) (11-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	63.93	93.056	0.595
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	53.398	95.37	0.509