Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K6Q96_RS01000 Genome accession   NZ_CP082275
Coordinates   205797..207482 (+) Length   561 a.a.
NCBI ID   WP_251879547.1    Uniprot ID   -
Organism   Grimontia kaedaensis strain 020920N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200797..212482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6Q96_RS00980 (K6Q96_00980) pilM 203117..204058 (+) 942 WP_251877153.1 pilus assembly protein PilM -
  K6Q96_RS00985 (K6Q96_00985) - 204042..204629 (+) 588 WP_251877155.1 PilN domain-containing protein -
  K6Q96_RS00990 (K6Q96_00990) pilO 204619..205212 (+) 594 WP_251877157.1 type 4a pilus biogenesis protein PilO -
  K6Q96_RS00995 (K6Q96_00995) - 205209..205724 (+) 516 WP_251877159.1 pilus assembly protein PilP -
  K6Q96_RS01000 (K6Q96_01000) pilQ 205797..207482 (+) 1686 WP_251879547.1 type IV pilus secretin PilQ Machinery gene
  K6Q96_RS01005 (K6Q96_01005) aroK 207766..208284 (+) 519 WP_062667127.1 shikimate kinase AroK -
  K6Q96_RS01010 (K6Q96_01010) aroB 208301..209377 (+) 1077 WP_251877161.1 3-dehydroquinate synthase -
  K6Q96_RS01015 (K6Q96_01015) - 209408..210916 (+) 1509 WP_353621782.1 AAA family ATPase -
  K6Q96_RS01020 (K6Q96_01020) - 211019..211852 (+) 834 WP_251877165.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  K6Q96_RS01025 (K6Q96_01025) - 211849..212061 (-) 213 WP_251877167.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 61008.21 Da        Isoelectric Point: 4.4056

>NTDB_id=600789 K6Q96_RS01000 WP_251879547.1 205797..207482(+) (pilQ) [Grimontia kaedaensis strain 020920N]
MVIAAVVASPWSLAANQLQNIDVKAGENGKTLLTLSLEDKSVVTNFTKSDGALSISLKGTSVEDNLVGIRSLQDIGKATA
NLDVKPVDDDVELTVLTDRHFGYDYYQTSNVLTVEIFPFASLPSAKKSDAEKSKKNKNISINFQDIPVRSVLQMVAEHNG
FNLVVSDSVQGSLTLRLDDVPWQKALQTILNVKGLDKRQMGNILLVAPKVELDEQERLVLEKRRQERELASLRSEVIQIK
YANAVDLKEMIGGGSSEDEGISLLSERGSIAVDPRTNSLVIKDLEDNIDVVKMMIDSLDIPVDQVEIEARIVTVDEGTLE
EIGVRWGVNSQNGNFTTGGSIEGNWQHSDRIDFGADNEPDELILDDLLNVNLGAVSPNASSIAFSVANLGKDLLLDLELS
ALQAESRAEIISSPRLLTTNKRSAYIEQGTELPYLEASSSGAAAVSFKKAVLSLSVTPQITPDSRLVLDLQVTQDKPAGT
VKAGTGEAMAINTQRIGTQVLVNDGETVVLGGIYQHEMMEGVDKVPLLGDIPGIGQLFRRNYETMGKRELLIFVTPRIMT
Q

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=600789 K6Q96_RS01000 WP_251879547.1 205797..207482(+) (pilQ) [Grimontia kaedaensis strain 020920N]
ATGGTGATAGCCGCAGTCGTGGCGTCACCTTGGTCGCTTGCGGCCAATCAGCTTCAAAATATTGATGTCAAAGCAGGGGA
GAATGGAAAAACCTTGCTGACACTGTCCCTTGAAGATAAATCCGTGGTGACCAATTTCACAAAAAGCGACGGCGCTTTGT
CGATAAGCCTTAAAGGCACATCGGTGGAAGACAACTTGGTGGGTATCCGCAGCCTTCAGGATATCGGAAAGGCAACGGCG
AATCTGGATGTTAAGCCCGTTGACGATGATGTTGAGCTGACCGTACTGACCGATAGGCACTTTGGGTATGACTACTATCA
GACTAGCAACGTGCTGACGGTAGAGATTTTCCCCTTTGCTTCTCTGCCTTCAGCTAAGAAATCTGATGCTGAGAAAAGCA
AGAAAAACAAAAATATCTCCATCAACTTCCAAGATATTCCTGTCCGTTCTGTGTTACAGATGGTGGCCGAGCACAACGGG
TTCAATCTGGTCGTCTCTGATTCCGTGCAGGGTAGTCTGACGTTACGATTGGACGATGTGCCATGGCAAAAGGCGCTGCA
GACTATTTTGAATGTCAAAGGTTTGGATAAGCGCCAGATGGGGAACATCCTGCTTGTGGCTCCAAAAGTTGAACTGGATG
AACAGGAACGTTTGGTACTTGAAAAACGTCGGCAGGAGCGTGAACTCGCATCATTACGCTCAGAGGTGATTCAGATTAAG
TATGCCAACGCCGTCGACCTTAAAGAGATGATCGGTGGTGGTAGCAGTGAAGATGAAGGCATTAGTCTGTTGTCAGAGCG
TGGCAGCATCGCCGTCGACCCACGTACCAACTCTCTGGTGATTAAAGATCTGGAAGATAACATCGACGTCGTAAAAATGA
TGATTGATTCACTGGATATTCCGGTTGACCAGGTTGAGATAGAAGCGCGTATCGTGACTGTGGATGAAGGCACGCTTGAA
GAAATTGGCGTTCGCTGGGGAGTTAACAGTCAAAACGGTAACTTCACGACGGGCGGCTCAATTGAAGGTAACTGGCAGCA
CTCAGACAGGATAGATTTTGGAGCAGACAATGAGCCTGACGAGTTGATTCTGGATGACCTACTTAATGTCAACTTGGGGG
CTGTGAGTCCAAACGCAAGCAGCATCGCATTCTCAGTCGCTAACTTAGGTAAAGATTTATTGCTCGATCTTGAACTGTCA
GCGCTGCAGGCTGAGTCTCGTGCGGAAATTATTTCCAGTCCCCGCCTGTTAACGACGAACAAACGCTCTGCGTATATTGA
ACAAGGCACTGAGCTACCCTATTTGGAAGCATCTTCAAGCGGTGCGGCTGCAGTGTCTTTTAAAAAGGCTGTTCTCAGTT
TGTCAGTGACTCCTCAAATTACGCCAGATAGCAGACTGGTCCTTGACCTTCAGGTCACTCAGGACAAACCTGCAGGTACT
GTAAAAGCAGGTACCGGCGAAGCAATGGCCATTAATACCCAACGTATTGGTACTCAGGTGCTGGTGAATGACGGGGAAAC
AGTCGTACTTGGCGGGATTTATCAACACGAAATGATGGAAGGCGTCGATAAGGTACCATTGTTGGGTGATATTCCAGGGA
TTGGTCAACTCTTTCGCCGTAACTACGAAACTATGGGTAAACGCGAGCTACTGATCTTTGTTACTCCAAGGATTATGACG
CAGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(235-304)

Bacterial type II and III secretion system protein (Secretin)

(401-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

57.447

100

0.578
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

57.447

100

0.578
  pilQ Vibrio campbellii strain DS40M4

55.154

98.574

0.544
  comQ Acinetobacter baylyi ADP1

38.501

100

0.403
  pilQ Pseudomonas aeruginosa PAK

38.957

100

0.399
  pilQ Acinetobacter baumannii D1279779

38.014

100

0.396
  pilQ Acinetobacter baumannii strain A118

38.014

100

0.396
  pilQ Legionella pneumophila strain ERS1305867

39.746

98.217

0.39
  pilQ Legionella pneumophila strain Lp02

39.564

98.217

0.389