Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   K6I41_RS01530 Genome accession   NZ_CP082274
Coordinates   326990..328048 (+) Length   352 a.a.
NCBI ID   WP_192834141.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 321990..333048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01515 (K6I41_01515) - 323015..323347 (+) 333 WP_005300952.1 hypothetical protein -
  K6I41_RS01520 (K6I41_01520) - 323350..324174 (+) 825 WP_250375083.1 putative RNA methyltransferase -
  K6I41_RS01525 (K6I41_01525) ponA 324267..326828 (-) 2562 WP_191900376.1 penicillin-binding protein PBP1a -
  K6I41_RS01530 (K6I41_01530) pilM 326990..328048 (+) 1059 WP_192834141.1 pilus assembly protein PilM Machinery gene
  K6I41_RS01535 (K6I41_01535) pilN 328048..328689 (+) 642 WP_250375084.1 PilN domain-containing protein Machinery gene
  K6I41_RS01540 (K6I41_01540) pilO 328686..329435 (+) 750 WP_250375085.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6I41_RS01545 (K6I41_01545) pilP 329446..329973 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  K6I41_RS01550 (K6I41_01550) pilQ 330036..332201 (+) 2166 WP_250375086.1 type IV pilus secretin PilQ family protein Machinery gene
  K6I41_RS01555 (K6I41_01555) aroK 332213..332782 (+) 570 WP_004789808.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39076.72 Da        Isoelectric Point: 4.4217

>NTDB_id=600740 K6I41_RS01530 WP_192834141.1 326990..328048(+) (pilM) [Acinetobacter sp. AS23]
MLRLYRKPNKGLMGVDISSTSVKLLELSVKNGKYWVESYALMPLPENSVVEKNILNPEAVAEVLERAMNLANPQTSNAAI
AVPTSTVIHKTIEMDADMNDDEREVQIRLDAEQYIPFPLDEVSLDFEVLPDRLPNPNRVNVLLVATRTENVETRVEVLEL
VDLTPKLADVESYAVERAFSVFADSLPMGANTIGILDIGHTMTTLSVMQSGKIIYTREQVFGGKQLTLEIQSRYGLSLEE
AGRAKKERSLPDDYDIEVLEPFLDAVVQQAARSLQFFFSSSQFNEIDHILLAGGNANIPGLAKLLQQKLGYRVTIANPFL
QMGFSPQVDIQKIENDASSLMVACGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=600740 K6I41_RS01530 WP_192834141.1 326990..328048(+) (pilM) [Acinetobacter sp. AS23]
GTGCTCAGGTTATATCGTAAACCGAATAAGGGGTTAATGGGTGTCGATATTAGTTCGACTTCTGTTAAGTTGTTAGAGCT
CTCTGTTAAGAACGGTAAATATTGGGTGGAAAGCTATGCTTTGATGCCTTTACCCGAGAACAGTGTAGTTGAAAAAAATA
TCTTGAATCCAGAGGCAGTAGCAGAAGTTTTGGAACGGGCGATGAATTTAGCAAATCCCCAAACCAGTAACGCTGCAATT
GCTGTTCCAACATCGACGGTTATTCATAAAACCATCGAAATGGATGCAGATATGAATGATGACGAACGAGAAGTTCAGAT
TCGTTTAGATGCGGAGCAGTATATACCGTTCCCTTTGGATGAAGTGAGTCTTGATTTTGAGGTTTTACCAGATCGACTGC
CTAATCCAAACCGTGTAAATGTACTTCTAGTTGCAACAAGAACAGAAAATGTTGAAACACGAGTAGAAGTGCTGGAGTTG
GTGGATCTAACGCCTAAGCTTGCTGATGTCGAAAGTTATGCTGTCGAGCGCGCTTTTAGTGTATTTGCTGATAGTTTGCC
CATGGGTGCAAATACCATTGGTATTTTAGATATCGGCCATACCATGACTACATTATCGGTTATGCAAAGTGGCAAAATCA
TTTATACCCGTGAACAAGTCTTCGGCGGCAAGCAGCTTACTCTGGAAATTCAAAGCCGTTATGGTTTGTCATTGGAAGAA
GCGGGACGAGCTAAAAAAGAACGCTCTTTACCCGATGACTATGACATCGAAGTCTTAGAGCCATTTTTAGATGCGGTAGT
GCAGCAAGCAGCCAGATCTCTACAATTTTTCTTTTCTTCATCACAGTTCAATGAAATAGACCATATTTTACTAGCAGGTG
GGAACGCCAATATTCCTGGACTTGCCAAATTGTTGCAGCAAAAACTTGGTTACCGTGTGACCATTGCCAATCCATTTTTA
CAAATGGGTTTTTCTCCTCAAGTCGATATTCAAAAAATTGAAAATGATGCCTCATCATTAATGGTGGCATGTGGCTTGGC
TTTAAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

96.023

100

0.96
  comM Acinetobacter nosocomialis M2

96.023

100

0.96
  comM Acinetobacter baylyi ADP1

81.818

100

0.818
  pilM Legionella pneumophila strain ERS1305867

42.09

100

0.423