Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   K6I41_RS01535 Genome accession   NZ_CP082274
Coordinates   328048..328689 (+) Length   213 a.a.
NCBI ID   WP_250375084.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 323048..333689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01520 (K6I41_01520) - 323350..324174 (+) 825 WP_250375083.1 putative RNA methyltransferase -
  K6I41_RS01525 (K6I41_01525) ponA 324267..326828 (-) 2562 WP_191900376.1 penicillin-binding protein PBP1a -
  K6I41_RS01530 (K6I41_01530) pilM 326990..328048 (+) 1059 WP_192834141.1 pilus assembly protein PilM Machinery gene
  K6I41_RS01535 (K6I41_01535) pilN 328048..328689 (+) 642 WP_250375084.1 PilN domain-containing protein Machinery gene
  K6I41_RS01540 (K6I41_01540) pilO 328686..329435 (+) 750 WP_250375085.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6I41_RS01545 (K6I41_01545) pilP 329446..329973 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  K6I41_RS01550 (K6I41_01550) pilQ 330036..332201 (+) 2166 WP_250375086.1 type IV pilus secretin PilQ family protein Machinery gene
  K6I41_RS01555 (K6I41_01555) aroK 332213..332782 (+) 570 WP_004789808.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23930.32 Da        Isoelectric Point: 5.4112

>NTDB_id=600741 K6I41_RS01535 WP_250375084.1 328048..328689(+) (pilN) [Acinetobacter sp. AS23]
MAIINLLPWRDGLREQRKKQFIIFCFGVVVLGITTVFSGWFYLNQKLDDQEQANQLITSTNQSLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPAAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEEKKDKTASSLLPRVEDSYGSFVVTVDLGEMGVTTTDDTANTSVSADKGAVK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=600741 K6I41_RS01535 WP_250375084.1 328048..328689(+) (pilN) [Acinetobacter sp. AS23]
ATGGCAATAATTAATTTACTCCCTTGGCGTGATGGGCTTAGGGAACAGCGCAAAAAACAATTTATTATTTTCTGTTTTGG
AGTAGTTGTTCTGGGGATCACCACTGTATTTTCTGGGTGGTTTTATTTGAATCAAAAATTAGATGATCAAGAACAAGCTA
ATCAACTCATTACCAGTACAAACCAGAGTCTAGATCAACAGCTTAAAACCTTAAATGGCTTGCAAGAGCAACGTGATGCC
ATTATCGAACGTATGAAACTTATTCAGGGGTTGCAAAGTCAACGTCCTGTTGTTGTGCGTTTGGTGGATGAATTGGTACG
GGTGACTCCGGCAGCGATGTATTTGACTAAATTTAGCAGAACTGGAGATAAGTTTACCATTGAAGGTAAAGCAGAAAGTC
CAAATACGGTCGCGGAGTTATTACGTAATCTCGAAGCATCACCATGGTATCGCAATGCTTTTATGAACTCTTTCTTGGCG
ACCGAAGAGAAAAAAGATAAGACGGCGAGTTCACTGCTTCCTAGAGTAGAAGATAGTTATGGCAGTTTTGTTGTGACTGT
TGATTTAGGAGAAATGGGGGTGACTACAACAGATGATACCGCGAATACGTCTGTAAGTGCGGATAAGGGGGCGGTTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

88.732

100

0.887
  comN Acinetobacter baylyi ADP1

72.115

97.653

0.704