Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K6I41_RS01550 Genome accession   NZ_CP082274
Coordinates   330036..332201 (+) Length   721 a.a.
NCBI ID   WP_250375086.1    Uniprot ID   -
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 325036..337201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01530 (K6I41_01530) pilM 326990..328048 (+) 1059 WP_192834141.1 pilus assembly protein PilM Machinery gene
  K6I41_RS01535 (K6I41_01535) pilN 328048..328689 (+) 642 WP_250375084.1 PilN domain-containing protein Machinery gene
  K6I41_RS01540 (K6I41_01540) pilO 328686..329435 (+) 750 WP_250375085.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6I41_RS01545 (K6I41_01545) pilP 329446..329973 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  K6I41_RS01550 (K6I41_01550) pilQ 330036..332201 (+) 2166 WP_250375086.1 type IV pilus secretin PilQ family protein Machinery gene
  K6I41_RS01555 (K6I41_01555) aroK 332213..332782 (+) 570 WP_004789808.1 shikimate kinase AroK -
  K6I41_RS01560 (K6I41_01560) aroB 332811..333893 (+) 1083 WP_151988679.1 3-dehydroquinate synthase -
  K6I41_RS01565 (K6I41_01565) - 333910..334788 (+) 879 WP_250375087.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 77886.23 Da        Isoelectric Point: 6.5281

>NTDB_id=600744 K6I41_RS01550 WP_250375086.1 330036..332201(+) (pilQ) [Acinetobacter sp. AS23]
MNHVFRQFSMGAVAIALMQVASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFNKAQQTLTQSKV
AIGTNEASSVDVSSDDQRSRLTVNLKEAGAFTTRIEGNTFILKINSAQAAIKPLPTTTVQPQGVSNIGFQRGGQGEGLIV
IDLLGSNTPVDVQQQGSKVVVRTLGSKIPTHLAKRLNVNDFATPVSTIESYNEKGNGVITVQSTGSYEYMAYQAENKLTI
SLKRPQDKNVTSLYKTPNYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVAELIKAEEEEAKAVAQSVKLAPLQTEYIQLKYAQAHDIMGLITQGSNNGNGLQHTSGGGTSTSTNL
NTGVDSLGNNVGSLLSPRGTITQDDRTNTLIINDTAQSIDQIRKMIDLLDVQVKQVMVEARIVRASTSFTKELGVKWGIL
SQGITNNNNLLVGGSETTLWNLRKPEKDSTTGGYTYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADG
YGEVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGKIQMKLDISKDSVAGAAPN
GELILNKNQINTNVLVNNGETVILGGVFEQTTSNSQTKVPFFGDIPVLGHLFRKDVKSDDKQELLIFVTPRIVNDTLVRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=600744 K6I41_RS01550 WP_250375086.1 330036..332201(+) (pilQ) [Acinetobacter sp. AS23]
ATGAATCACGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCCATTGCACTTATGCAGGTTGCCTCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTCGAGTTATGTTTAATGGTTTGCCACCACAACCAC
AGGCATACCAACTTGAAAATCCTTCACGTTTGATTTTGGATTTTAATAAAGCTCAGCAGACTTTAACACAGTCAAAAGTA
GCAATTGGTACAAATGAAGCAAGCTCAGTTGATGTAAGTTCTGATGATCAGCGCTCACGTTTAACTGTAAATTTAAAAGA
GGCAGGTGCGTTTACAACGCGCATTGAAGGCAATACTTTTATTCTAAAGATTAATTCAGCTCAAGCAGCTATTAAGCCTT
TACCAACCACTACAGTACAGCCGCAAGGTGTCTCAAATATTGGCTTTCAGCGCGGTGGTCAAGGTGAAGGATTAATTGTT
ATTGATTTATTGGGAAGTAATACCCCTGTTGATGTTCAGCAACAAGGTAGCAAAGTCGTAGTGAGAACTCTGGGCTCTAA
AATTCCTACCCATTTGGCTAAACGTTTAAATGTGAACGATTTTGCAACTCCTGTTTCTACCATTGAATCTTATAACGAAA
AAGGCAATGGTGTTATTACGGTCCAATCTACTGGTAGCTATGAATATATGGCTTATCAAGCGGAAAATAAACTCACCATT
AGCTTAAAGCGTCCTCAGGATAAAAACGTAACTTCTTTATATAAGACACCTAATTACTCTGGTAATAAGCTTTCTCTTGA
TTTCCAAGATATTGAAGTCCGTCGTGTTTTACAATTACTTGCCGATTTTACTGGCATTAATATGGTAGCCGCCGATAGTG
TTCAGGGTAATATTACTTTGCGCTTGAAAGATGTTCCGTGGGATCAGGCACTTGATATTATTTTAAAGACTAAAAATCTG
GATAAACGCAGAAATGGTAACGTTATTTGGATTGCGCCTGTTGCGGAATTGATTAAGGCTGAAGAAGAAGAAGCAAAAGC
TGTCGCACAGAGTGTCAAACTCGCTCCTTTGCAAACTGAGTATATTCAACTTAAATATGCGCAAGCACACGATATTATGG
GTTTAATTACTCAAGGTTCAAATAATGGCAATGGTTTGCAGCATACTTCAGGTGGGGGTACTTCAACTTCTACTAACTTA
AATACGGGTGTTGATAGTTTAGGAAATAATGTAGGAAGTTTATTGAGTCCACGTGGAACAATTACTCAAGATGATCGCAC
CAATACCTTGATTATTAACGATACAGCTCAGTCGATTGATCAAATTCGTAAAATGATTGATTTACTGGATGTACAAGTTA
AGCAGGTCATGGTTGAGGCACGTATTGTTAGAGCATCTACTTCTTTTACTAAAGAGCTTGGTGTTAAATGGGGAATATTA
TCGCAAGGGATTACCAATAATAATAACTTGCTGGTTGGTGGTAGTGAAACAACCTTATGGAATTTAAGAAAGCCAGAAAA
AGACAGTACAACGGGTGGTTATACATATACGATTGAACGTCCAGATAACTTAAACGTCGATTTAGGGGTAACCAATCCGG
CTGGAAGTATTGCCTTTGGTTTGATTAGCATGTCTGATTTTATGCTTGATCTTGAACTTTCAGCATTACAAGCTGATGGC
TATGGTGAGGTTATTTCTACACCTAAAGTCATGACGGCAGATAAACAACCAGCGAAAGTTGCAACAGGTCAGCAGGTCCC
TTATCAATCTACAACGAACTCTGCTGCAGGCTCAACCGCTACAACCTCATTTAAAGATGCGCTGTTAAGCTTAAACGTGA
CACCAAGTATTACACCTGATGGTAAGATCCAAATGAAATTAGATATTTCGAAAGATTCTGTTGCTGGTGCTGCTCCTAAT
GGTGAGTTAATTTTAAATAAAAATCAGATTAACACCAATGTATTGGTTAATAACGGTGAAACAGTCATTTTAGGAGGGGT
ATTTGAACAGACGACATCTAACTCACAAACCAAGGTTCCTTTCTTTGGTGATATTCCTGTACTTGGGCATTTATTCAGAA
AAGATGTGAAATCTGATGATAAACAAGAGTTACTGATTTTCGTTACTCCACGAATTGTTAATGACACTTTGGTGAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

AMIN domain (AMIN)

(39-118)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-455)

Bacterial type II and III secretion system protein (Secretin)

(555-713)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

93.204

100

0.932
  pilQ Acinetobacter baumannii strain A118

93.065

100

0.931
  comQ Acinetobacter baylyi ADP1

74.827

100

0.75
  pilQ Pseudomonas aeruginosa PAK

39.47

99.445

0.393