Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   K6I41_RS01545 Genome accession   NZ_CP082274
Coordinates   329446..329973 (+) Length   175 a.a.
NCBI ID   WP_042895464.1    Uniprot ID   A0A0B2UG91
Organism   Acinetobacter sp. AS23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324446..334973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6I41_RS01530 (K6I41_01530) pilM 326990..328048 (+) 1059 WP_192834141.1 pilus assembly protein PilM Machinery gene
  K6I41_RS01535 (K6I41_01535) pilN 328048..328689 (+) 642 WP_250375084.1 PilN domain-containing protein Machinery gene
  K6I41_RS01540 (K6I41_01540) pilO 328686..329435 (+) 750 WP_250375085.1 type 4a pilus biogenesis protein PilO Machinery gene
  K6I41_RS01545 (K6I41_01545) pilP 329446..329973 (+) 528 WP_042895464.1 pilus assembly protein PilP Machinery gene
  K6I41_RS01550 (K6I41_01550) pilQ 330036..332201 (+) 2166 WP_250375086.1 type IV pilus secretin PilQ family protein Machinery gene
  K6I41_RS01555 (K6I41_01555) aroK 332213..332782 (+) 570 WP_004789808.1 shikimate kinase AroK -
  K6I41_RS01560 (K6I41_01560) aroB 332811..333893 (+) 1083 WP_151988679.1 3-dehydroquinate synthase -
  K6I41_RS01565 (K6I41_01565) - 333910..334788 (+) 879 WP_250375087.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19309.39 Da        Isoelectric Point: 9.4623

>NTDB_id=600743 K6I41_RS01545 WP_042895464.1 329446..329973(+) (pilP) [Acinetobacter sp. AS23]
MKLKQISFSILACLVLVGCDSRIDAVNQQMANIRNQPPQPIDPAPVFTPVPQFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALESLNMKGSIRNNRGQVLALIQSPDQQIERVQVGNYIGMNQGRITHIGPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=600743 K6I41_RS01545 WP_042895464.1 329446..329973(+) (pilP) [Acinetobacter sp. AS23]
ATGAAACTTAAGCAAATTTCTTTTTCTATTTTGGCATGTTTAGTTTTAGTTGGATGTGACTCGAGAATTGATGCTGTAAA
TCAGCAAATGGCAAATATACGTAATCAGCCACCACAGCCGATAGATCCAGCACCTGTTTTCACGCCTGTACCACAATTTA
ACTATGCGGCTCATCAGCTAAAGAGTCCATTTTTACCAAGCTCACTTGCTGCTGAGCTCAAAATTATGGCAGGAAAACGG
GTGTATCCGAACTTCTCACGTGCACCTCAGCCTCTAGAAAGTTATGCATTAGAATCCTTAAACATGAAAGGAAGCATACG
TAATAACCGTGGGCAAGTATTGGCTCTTATCCAATCACCCGATCAGCAAATTGAACGGGTACAGGTGGGGAACTATATCG
GGATGAACCAAGGGCGTATTACCCATATTGGTCCAACCCAGATTGATCTGGTAGAGATTGTTCCTGATGGGCGCGAAGGC
TATGTGGAGAGACCAAGAACCTTAGTGTTAATTGGACCCGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B2UG91

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

90.286

100

0.903
  comL Acinetobacter baylyi ADP1

71.345

97.714

0.697