Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   K6973_RS10660 Genome accession   NZ_CP082206
Coordinates   2161975..2163246 (-) Length   423 a.a.
NCBI ID   WP_143928078.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2156975..2168246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS10630 (K6973_10630) - 2157031..2158593 (-) 1563 WP_222819387.1 DUF2079 domain-containing protein -
  K6973_RS10635 (K6973_10635) - 2158929..2159234 (-) 306 WP_003045716.1 DUF1292 domain-containing protein -
  K6973_RS10640 (K6973_10640) ruvX 2159245..2159664 (-) 420 WP_218654923.1 Holliday junction resolvase RuvX -
  K6973_RS10645 (K6973_10645) - 2159661..2159930 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  K6973_RS10650 (K6973_10650) spx 2160042..2160440 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  K6973_RS10655 (K6973_10655) recA 2160734..2161870 (-) 1137 WP_003058758.1 recombinase RecA Machinery gene
  K6973_RS10660 (K6973_10660) cinA 2161975..2163246 (-) 1272 WP_143928078.1 competence/damage-inducible protein A Machinery gene
  K6973_RS10665 (K6973_10665) - 2163370..2163723 (-) 354 WP_222819388.1 VOC family protein -
  K6973_RS10670 (K6973_10670) - 2163726..2164298 (-) 573 WP_138126794.1 DNA-3-methyladenine glycosylase I -
  K6973_RS10675 (K6973_10675) ruvA 2164308..2164901 (-) 594 WP_129556363.1 Holliday junction branch migration protein RuvA -
  K6973_RS10680 (K6973_10680) - 2164903..2166123 (-) 1221 WP_222819389.1 MFS transporter -
  K6973_RS10685 (K6973_10685) mutL 2166134..2168116 (-) 1983 WP_222819390.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46031.49 Da        Isoelectric Point: 4.7069

>NTDB_id=600130 K6973_RS10660 WP_143928078.1 2161975..2163246(-) (cinA) [Streptococcus dysgalactiae strain DY107]
MKAELITVGTEILTGQIVNTNAQFLSEKMAELGIDVYFQTAVGDNEERLLSVIATASQRSDLVILCGGLGPTEDDLTKQT
LAKYLNRDLVFEEQASQKLDDFYASRKESSRTANNAKQAQIIAGSSPLQNRTGLAVGGLITVNEVTYVVLPGPPSELKPM
VNEELLPLLSTQSRKLYSRVLRFFGIGESQLVTVLSDLIENQTDPTIAPYAKTGEVTLRLSTKAENQTLADTKLDPLEAQ
LLSRKTPDNQSLSDFLYGYREDNSLAREVFELLVKYDKTITAAESLTAGLFQSTLASFPGASQVFNGGFVTYSMEEKAKM
LGIPLEDLISHGVVSAYTAEKMAEQTRLLTGADIGVSLTGVAGPDMLEDQPVGTVFIGLATQNKVESMKVLIGGRSRSDV
RHIATLHAFNMVRKTLLKPENLL

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=600130 K6973_RS10660 WP_143928078.1 2161975..2163246(-) (cinA) [Streptococcus dysgalactiae strain DY107]
ATGAAAGCTGAACTGATTACAGTAGGTACCGAAATTTTGACTGGTCAAATTGTGAATACCAATGCTCAATTTCTGTCGGA
AAAAATGGCAGAGCTAGGTATTGATGTCTATTTTCAAACGGCTGTTGGGGATAACGAGGAGCGTTTACTTTCAGTGATTG
CAACTGCTAGTCAGCGGAGTGATTTGGTCATTTTATGCGGCGGTCTTGGTCCCACGGAAGATGATTTAACCAAGCAGACT
TTAGCAAAATATCTTAATAGAGATTTGGTCTTTGAAGAACAAGCTAGTCAAAAATTGGACGATTTTTATGCTAGTCGTAA
AGAGTCATCTCGAACGGCAAATAATGCTAAGCAGGCTCAAATCATTGCTGGTTCAAGCCCTCTGCAAAATAGAACAGGAC
TTGCAGTGGGTGGCTTAATCACTGTTAATGAGGTGACTTATGTTGTTTTACCCGGGCCGCCAAGTGAATTAAAACCTATG
GTTAATGAGGAACTGCTTCCTCTTTTGTCCACACAATCTCGCAAACTTTATTCGAGAGTTTTACGATTTTTTGGGATTGG
TGAGAGTCAGCTGGTGACGGTCTTATCAGACCTTATTGAGAATCAAACTGACCCTACTATTGCACCTTATGCTAAAACTG
GTGAAGTGACCCTTCGTTTATCAACGAAAGCTGAAAATCAAACATTAGCAGATACGAAATTAGATCCACTAGAAGCGCAG
CTATTGTCGCGAAAAACTCCTGACAACCAGTCGTTATCAGATTTTCTTTATGGCTATAGGGAGGATAATTCCTTAGCGCG
TGAGGTATTTGAGCTCTTAGTAAAATATGATAAGACAATTACAGCAGCAGAAAGTCTAACCGCGGGATTATTTCAGTCAA
CTTTGGCGAGTTTTCCAGGAGCTTCTCAAGTATTCAATGGAGGCTTTGTAACTTATAGCATGGAAGAAAAAGCGAAAATG
CTAGGCATTCCTTTAGAGGATTTGATATCGCATGGAGTTGTTAGTGCTTATACGGCCGAGAAGATGGCGGAGCAAACACG
GTTATTGACTGGTGCTGATATTGGGGTAAGTTTAACAGGTGTTGCTGGACCAGATATGTTGGAGGACCAGCCTGTAGGTA
CAGTTTTCATTGGCCTTGCCACTCAAAATAAGGTAGAATCAATGAAGGTTTTAATCGGGGGACGGAGCCGCTCAGATGTG
CGTCATATTGCGACTTTACATGCTTTTAATATGGTCCGTAAAACTTTATTAAAACCTGAAAATTTGCTATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

72.104

100

0.721
  cinA Streptococcus mitis SK321

70.504

98.582

0.695
  cinA Streptococcus mitis NCTC 12261

69.544

98.582

0.686
  cinA Streptococcus pneumoniae TIGR4

69.305

98.582

0.683
  cinA Streptococcus pneumoniae Rx1

69.305

98.582

0.683
  cinA Streptococcus pneumoniae R6

69.305

98.582

0.683
  cinA Streptococcus pneumoniae D39

69.065

98.582

0.681
  cinA Streptococcus suis isolate S10

53.365

98.345

0.525
  cinA Bacillus subtilis subsp. subtilis str. 168

45.694

98.818

0.452