Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   K6974_RS00805 Genome accession   NZ_CP082204
Coordinates   131343..132380 (+) Length   345 a.a.
NCBI ID   WP_261311719.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 126343..137380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00780 - 127719..127907 (+) 189 Protein_119 helix-turn-helix domain-containing protein -
  K6974_RS00785 (K6974_00770) - 127908..128754 (+) 847 Protein_120 IS630 family transposase -
  K6974_RS00790 (K6974_00775) - 128941..129300 (+) 360 WP_099875663.1 DUF1033 family protein -
  K6974_RS00795 (K6974_00780) - 129445..130395 (-) 951 WP_222337411.1 S66 peptidase family protein -
  K6974_RS00800 (K6974_00785) comYA 130481..131431 (+) 951 WP_222337410.1 competence type IV pilus ATPase ComGA Machinery gene
  K6974_RS00805 (K6974_00790) comYB 131343..132380 (+) 1038 WP_261311719.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6974_RS00810 (K6974_00795) comYC 132382..132663 (+) 282 WP_222337409.1 competence type IV pilus major pilin ComGC Machinery gene
  K6974_RS00815 (K6974_00800) comGD 132644..133051 (+) 408 WP_222337408.1 competence type IV pilus minor pilin ComGD -
  K6974_RS00820 (K6974_00805) comYE 133023..133316 (+) 294 WP_222337407.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6974_RS00825 (K6974_00810) comGF/cglF 133303..133737 (+) 435 WP_222337406.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6974_RS00830 (K6974_00815) comGG 133715..134227 (+) 513 WP_222337405.1 competence type IV pilus minor pilin ComGG -
  K6974_RS00835 (K6974_00820) - 134455..136536 (+) 2082 WP_172042577.1 autolysin AtlA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39045.92 Da        Isoelectric Point: 8.7939

>NTDB_id=599969 K6974_RS00805 WP_261311719.1 131343..132380(+) (comYB) [Streptococcus suis strain FJSM5]
MNKLIAFLQQDISVFGRQKQKKLPLARQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVATYPIILLGFLLLIMLGLKNYLLPQLEEGNAATV
LINHLPTIFLSLCGLSLVAVMSSLVWFRKTNKIKAFSRLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQDFHEHLKTYAFFKRELSLIVEYGQVKSKLGSELTVYAAECWEDFFSWVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=599969 K6974_RS00805 WP_261311719.1 131343..132380(+) (comYB) [Streptococcus suis strain FJSM5]
ATGAACAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTAGCGCG
CCAGCGTAAGGTCATTGAGCTGTTTAACAATCTCTTTGCCAGTGGTTTTCATCTGGGGGAGATTGTTGATTTCCTCAAGC
GTAGTCAGCTTTTGGCAGACCCTTATACACAAGTTTTATCCGATGGTCTTCTTGCAGGCAAACCTTTTTCAAGTTTGCTG
GCGGATTTGCGGTTTTCCGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGTAATACCAGCCTGAGTTTGAG
CCATATTCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGGCGACCTATCCGATTATATTGC
TTGGTTTTCTGCTTTTGATTATGCTAGGCTTGAAAAACTATCTTCTGCCCCAGTTGGAGGAAGGCAACGCAGCGACCGTG
CTAATTAACCATCTGCCGACCATCTTCTTGTCCCTTTGTGGTCTGAGTTTAGTGGCTGTCATGTCTAGTCTGGTTTGGTT
TCGTAAAACAAACAAAATCAAGGCATTTTCCCGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTACCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGTTTGGACCTGCCGCAGATTGTGGGCTTAATGCAGGAG
CAGCAATCGCAGCTCTTTCGGGAGATTGGCCAGGACTTGGAGCAGTCGCTTTCCAATGGACAGGATTTTCACGAACACCT
CAAGACCTACGCCTTTTTCAAGCGAGAGCTGAGCCTCATCGTGGAGTATGGTCAGGTCAAGTCCAAGTTGGGGAGCGAGT
TGACAGTTTATGCAGCCGAGTGTTGGGAGGATTTTTTCTCTTGGGTCAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTTATCTACGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

62.573

99.13

0.62
  comGB/cglB Streptococcus mitis NCTC 12261

60

97.101

0.583
  comYB Streptococcus mutans UA140

58.944

98.841

0.583
  comYB Streptococcus mutans UA159

58.944

98.841

0.583
  comGB/cglB Streptococcus mitis SK321

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae Rx1

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae D39

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae R6

59.403

97.101

0.577
  comGB/cglB Streptococcus pneumoniae TIGR4

59.403

97.101

0.577
  comGB Lactococcus lactis subsp. cremoris KW2

50.742

97.681

0.496