Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYE   Type   Machinery gene
Locus tag   K6974_RS00820 Genome accession   NZ_CP082204
Coordinates   133023..133316 (+) Length   97 a.a.
NCBI ID   WP_222337407.1    Uniprot ID   A0A9X4MU77
Organism   Streptococcus suis strain FJSM5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128023..138316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00790 (K6974_00775) - 128941..129300 (+) 360 WP_099875663.1 DUF1033 family protein -
  K6974_RS00795 (K6974_00780) - 129445..130395 (-) 951 WP_222337411.1 S66 peptidase family protein -
  K6974_RS00800 (K6974_00785) comYA 130481..131431 (+) 951 WP_222337410.1 competence type IV pilus ATPase ComGA Machinery gene
  K6974_RS00805 (K6974_00790) comYB 131343..132380 (+) 1038 WP_261311719.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6974_RS00810 (K6974_00795) comYC 132382..132663 (+) 282 WP_222337409.1 competence type IV pilus major pilin ComGC Machinery gene
  K6974_RS00815 (K6974_00800) comGD 132644..133051 (+) 408 WP_222337408.1 competence type IV pilus minor pilin ComGD -
  K6974_RS00820 (K6974_00805) comYE 133023..133316 (+) 294 WP_222337407.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6974_RS00825 (K6974_00810) comGF/cglF 133303..133737 (+) 435 WP_222337406.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6974_RS00830 (K6974_00815) comGG 133715..134227 (+) 513 WP_222337405.1 competence type IV pilus minor pilin ComGG -
  K6974_RS00835 (K6974_00820) - 134455..136536 (+) 2082 WP_172042577.1 autolysin AtlA -
  K6974_RS00840 (K6974_00825) - 136925..138235 (+) 1311 WP_024398314.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10731.52 Da        Isoelectric Point: 8.0151

>NTDB_id=599971 K6974_RS00820 WP_222337407.1 133023..133316(+) (comYE) [Streptococcus suis strain FJSM5]
MVAIRKQKNKAYILLESLVALATLVTICSLILSAVDAGRRRQAWELEQQEVLSLAQMAVQTEQDDLALNGVAVQVQRTSD
RVAVFHEGKEVLSVVKK

Nucleotide


Download         Length: 294 bp        

>NTDB_id=599971 K6974_RS00820 WP_222337407.1 133023..133316(+) (comYE) [Streptococcus suis strain FJSM5]
GTGGTCGCTATAAGAAAACAGAAGAATAAGGCTTATATTTTGCTAGAAAGTTTGGTAGCCCTAGCTACCTTGGTGACCAT
TTGCAGCTTGATTTTATCAGCGGTGGATGCAGGTCGCAGGCGACAGGCTTGGGAATTGGAACAACAGGAGGTTCTCAGTC
TAGCTCAGATGGCCGTGCAGACCGAGCAAGATGACCTAGCCTTAAACGGAGTTGCAGTTCAGGTTCAACGGACTTCGGAT
AGAGTTGCGGTTTTCCACGAGGGAAAGGAGGTTTTATCGGTTGTTAAAAAGTAA

Domains

Predicted by InterproScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYE Streptococcus mutans UA140

52.577

100

0.526
  comYE Streptococcus mutans UA159

52.577

100

0.526
  comGE/cglE Streptococcus pneumoniae Rx1

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae D39

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae R6

40.217

94.845

0.381
  comGE/cglE Streptococcus pneumoniae TIGR4

40.217

94.845

0.381
  comGE/cglE Streptococcus mitis SK321

39.13

94.845

0.371
  comGE/cglE Streptococcus mitis NCTC 12261

39.13

94.845

0.371