Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF/cglF   Type   Machinery gene
Locus tag   K6974_RS00825 Genome accession   NZ_CP082204
Coordinates   133303..133737 (+) Length   144 a.a.
NCBI ID   WP_222337406.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128303..138737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00790 (K6974_00775) - 128941..129300 (+) 360 WP_099875663.1 DUF1033 family protein -
  K6974_RS00795 (K6974_00780) - 129445..130395 (-) 951 WP_222337411.1 S66 peptidase family protein -
  K6974_RS00800 (K6974_00785) comYA 130481..131431 (+) 951 WP_222337410.1 competence type IV pilus ATPase ComGA Machinery gene
  K6974_RS00805 (K6974_00790) comYB 131343..132380 (+) 1038 WP_261311719.1 competence type IV pilus assembly protein ComGB Machinery gene
  K6974_RS00810 (K6974_00795) comYC 132382..132663 (+) 282 WP_222337409.1 competence type IV pilus major pilin ComGC Machinery gene
  K6974_RS00815 (K6974_00800) comGD 132644..133051 (+) 408 WP_222337408.1 competence type IV pilus minor pilin ComGD -
  K6974_RS00820 (K6974_00805) comYE 133023..133316 (+) 294 WP_222337407.1 competence type IV pilus minor pilin ComGE Machinery gene
  K6974_RS00825 (K6974_00810) comGF/cglF 133303..133737 (+) 435 WP_222337406.1 competence type IV pilus minor pilin ComGF Machinery gene
  K6974_RS00830 (K6974_00815) comGG 133715..134227 (+) 513 WP_222337405.1 competence type IV pilus minor pilin ComGG -
  K6974_RS00835 (K6974_00820) - 134455..136536 (+) 2082 WP_172042577.1 autolysin AtlA -
  K6974_RS00840 (K6974_00825) - 136925..138235 (+) 1311 WP_024398314.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16414.72 Da        Isoelectric Point: 6.3876

>NTDB_id=599972 K6974_RS00825 WP_222337406.1 133303..133737(+) (comGF/cglF) [Streptococcus suis strain FJSM5]
MLKSKVLAFTLLECLVALVIVSGSLLIFEGLSKLLVQEAQYQGQTVQKEWLVFSSQLRSEWDQSELVKVENGKVYVNKDG
QALAFGKSRSDDFRKTNDRGQGYQPMIYQVDSAAISQENQLVRIDFSFKNGEERTFIYAFKEKS

Nucleotide


Download         Length: 435 bp        

>NTDB_id=599972 K6974_RS00825 WP_222337406.1 133303..133737(+) (comGF/cglF) [Streptococcus suis strain FJSM5]
TTGTTAAAAAGTAAGGTTCTTGCTTTTACCCTATTGGAATGCTTGGTGGCTCTAGTCATCGTTTCAGGCAGCCTCTTGAT
TTTTGAAGGCTTGTCAAAGTTGTTGGTTCAAGAAGCACAGTACCAAGGTCAGACCGTTCAAAAGGAATGGTTGGTCTTCT
CTAGTCAATTGCGGTCGGAGTGGGACCAGTCGGAATTGGTCAAGGTTGAAAATGGCAAGGTCTATGTCAATAAGGATGGA
CAAGCATTAGCCTTTGGCAAGTCACGTTCGGATGATTTTCGGAAAACAAATGACAGAGGACAGGGCTATCAGCCCATGAT
TTATCAAGTAGACAGCGCAGCTATTTCCCAAGAAAACCAACTGGTGCGCATCGATTTTAGCTTTAAAAACGGAGAGGAGC
GGACCTTTATCTATGCTTTTAAAGAAAAAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(37-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF/cglF Streptococcus pneumoniae Rx1

55.634

98.611

0.549
  comGF/cglF Streptococcus pneumoniae D39

55.634

98.611

0.549
  comGF/cglF Streptococcus pneumoniae R6

55.634

98.611

0.549
  comGF/cglF Streptococcus pneumoniae TIGR4

55.634

98.611

0.549
  comGF/cglF Streptococcus mitis NCTC 12261

55.224

93.056

0.514
  comGF/cglF Streptococcus mitis SK321

53.731

93.056

0.5
  comYF Streptococcus mutans UA140

47.917

100

0.479
  comYF Streptococcus mutans UA159

47.222

100

0.472
  comGF Lactococcus lactis subsp. cremoris KW2

44.681

97.917

0.438